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dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD
OBJECTIVE: Achieving sufficient statistical power in a survival analysis usually requires large amounts of data from different sites. Sensitivity of individual-level data, ethical and practical considerations regarding data sharing across institutions could be a potential challenge for achieving thi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9166323/ https://www.ncbi.nlm.nih.gov/pubmed/35659747 http://dx.doi.org/10.1186/s13104-022-06085-1 |
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author | Banerjee, Soumya Sofack, Ghislain N. Papakonstantinou, Thodoris Avraam, Demetris Burton, Paul Zöller, Daniela Bishop, Tom R. P. |
author_facet | Banerjee, Soumya Sofack, Ghislain N. Papakonstantinou, Thodoris Avraam, Demetris Burton, Paul Zöller, Daniela Bishop, Tom R. P. |
author_sort | Banerjee, Soumya |
collection | PubMed |
description | OBJECTIVE: Achieving sufficient statistical power in a survival analysis usually requires large amounts of data from different sites. Sensitivity of individual-level data, ethical and practical considerations regarding data sharing across institutions could be a potential challenge for achieving this added power. Hence we implemented a federated meta-analysis approach of survival models in DataSHIELD, where only anonymous aggregated data are shared across institutions, while simultaneously allowing for exploratory, interactive modelling. In this case, meta-analysis techniques to combine analysis results from each site are a solution, but an analytic workflow involving local analysis undertaken at individual studies hinders exploration. Thus, the aim is to provide a framework for performing meta-analysis of Cox regression models across institutions without manual analysis steps for the data providers. RESULTS: We introduce a package (dsSurvival) which allows privacy preserving meta-analysis of survival models, including the calculation of hazard ratios. Our tool can be of great use in biomedical research where there is a need for building survival models and there are privacy concerns about sharing data. |
format | Online Article Text |
id | pubmed-9166323 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-91663232022-06-05 dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD Banerjee, Soumya Sofack, Ghislain N. Papakonstantinou, Thodoris Avraam, Demetris Burton, Paul Zöller, Daniela Bishop, Tom R. P. BMC Res Notes Research Note OBJECTIVE: Achieving sufficient statistical power in a survival analysis usually requires large amounts of data from different sites. Sensitivity of individual-level data, ethical and practical considerations regarding data sharing across institutions could be a potential challenge for achieving this added power. Hence we implemented a federated meta-analysis approach of survival models in DataSHIELD, where only anonymous aggregated data are shared across institutions, while simultaneously allowing for exploratory, interactive modelling. In this case, meta-analysis techniques to combine analysis results from each site are a solution, but an analytic workflow involving local analysis undertaken at individual studies hinders exploration. Thus, the aim is to provide a framework for performing meta-analysis of Cox regression models across institutions without manual analysis steps for the data providers. RESULTS: We introduce a package (dsSurvival) which allows privacy preserving meta-analysis of survival models, including the calculation of hazard ratios. Our tool can be of great use in biomedical research where there is a need for building survival models and there are privacy concerns about sharing data. BioMed Central 2022-06-03 /pmc/articles/PMC9166323/ /pubmed/35659747 http://dx.doi.org/10.1186/s13104-022-06085-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Banerjee, Soumya Sofack, Ghislain N. Papakonstantinou, Thodoris Avraam, Demetris Burton, Paul Zöller, Daniela Bishop, Tom R. P. dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title | dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title_full | dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title_fullStr | dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title_full_unstemmed | dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title_short | dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD |
title_sort | dssurvival: privacy preserving survival models for federated individual patient meta-analysis in datashield |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9166323/ https://www.ncbi.nlm.nih.gov/pubmed/35659747 http://dx.doi.org/10.1186/s13104-022-06085-1 |
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