Cargando…

MIRIAM: A machine and deep learning single‐cell segmentation and quantification pipeline for multi‐dimensional tissue images

Increasingly, highly multiplexed tissue imaging methods are used to profile protein expression at the single‐cell level. However, a critical limitation is the lack of robust cell segmentation tools for tissue sections. We present Multiplexed Image Resegmentation of Internal Aberrant Membranes (MIRIA...

Descripción completa

Detalles Bibliográficos
Autores principales:	McKinley, Eliot T., Shao, Justin, Ellis, Samuel T., Heiser, Cody N., Roland, Joseph T., Macedonia, Mary C., Vega, Paige N., Shin, Susie, Coffey, Robert J., Lau, Ken S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley & Sons, Inc. 2022
Materias:	Computational Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9167255/ https://www.ncbi.nlm.nih.gov/pubmed/35084791 http://dx.doi.org/10.1002/cyto.a.24541

Ejemplares similares

Miriam
por: Keppy, Herman
Publicado: (2021)

A Conversation with Miriam Diamond
por: Pelley, Janet
Publicado: (2019)

GammaGateR: semi-automated marker gating for single-cell multiplexed imaging
por: Xiong, Jiangmei, et al.
Publicado: (2023)

El libro de Míriam : y, Primicias
por: Muñiz-Huberman, Angelina, 1936-
Publicado: (1990)

A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques
por: Heiser, Cody N., et al.
Publicado: (2020)

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification
por: Juty, Nick, et al.
Publicado: (2012)

Hilvanar una historia. Las pinturas de Ana Míriam Peláez
por: Sánchez Zurita, Beatriz
Publicado: (2021)

Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images
por: Harris, Coleman R, et al.
Publicado: (2022)

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology
por: Laibe, Camille, et al.
Publicado: (2007)

Single-Cell Computational Strategies for Lineage Reconstruction in Tissue Systems
por: Herring, Charles A., et al.
Publicado: (2018)

Tablas de uso práctico de los alimentos de mayor consumo "Miriam Muñoz" /
Publicado: (2014)

A Fully Automated Pipeline for Normative Atrophy in Patients with Neurodegenerative Disease
por: Rummel, Christian, et al.
Publicado: (2018)

Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer
por: Vega, Paige N., et al.
Publicado: (2022)

Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms
por: Macedonia, Mary C., et al.
Publicado: (2020)

3′-Deoxy-3′-[(18)F]-Fluorothymidine PET Imaging Reflects PI3K-mTOR-Mediated Pro-Survival Response to Targeted Therapy in Colorectal Cancer
por: McKinley, Eliot T., et al.
Publicado: (2014)

miRiam: A reliable unsupervised method for detecting miRNA binding sites on mRNAs: April 2010 Release
Publicado: (2010)

Direct cortical thickness estimation using deep learning‐based anatomy segmentation and cortex parcellation
por: Rebsamen, Michael, et al.
Publicado: (2020)

Divide and Conquer: Stratifying Training Data by Tumor Grade Improves Deep Learning-Based Brain Tumor Segmentation
por: Rebsamen, Michael, et al.
Publicado: (2019)

Automated quality control and cell identification of droplet-based single-cell data using dropkick
por: Heiser, Cody N., et al.
Publicado: (2021)

Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools
por: Chen, Bob, et al.
Publicado: (2021)

A Quantitative Imaging Biomarker Supporting Radiological Assessment of Hippocampal Sclerosis Derived From Deep Learning-Based Segmentation of T1w-MRI
por: Rebsamen, Michael, et al.
Publicado: (2022)

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
por: Schapiro, Denis, et al.
Publicado: (2021)

Full three-dimensional segmentation and quantification of tumor vessels for photoacoustic images
por: Sun, Mingjian, et al.
Publicado: (2020)

Optimization-based vessel segmentation pipeline for robust quantification of capillary networks in skin with optical coherence tomography angiography
por: Casper, Malte, et al.
Publicado: (2019)

Risk management for pandemics: a novel approach: “Hindsight is 20/20” English proverb
por: McKinley, Ian G., et al.
Publicado: (2021)

Global Phosphotyrosine Proteomics Identifies PKCδ as a Marker of Responsiveness to Src Inhibition in Colorectal Cancer
por: McKinley, Eliot T., et al.
Publicado: (2013)

A benchmark for RNA-seq quantification pipelines
por: Teng, Mingxiang, et al.
Publicado: (2016)

Limits of [(18)F]-FLT PET as a Biomarker of Proliferation in Oncology
por: McKinley, Eliot T., et al.
Publicado: (2013)

Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-α-induced apoptosis in vivo
por: Simmons, Alan J, et al.
Publicado: (2015)

Cytometry‐based single‐cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF‐α‐induced apoptosis in vivo
por: Simmons, Alan J, et al.
Publicado: (2016)

Quantification of the effects of antibodies on the extra- and intracellular dynamics of Salmonella enterica
por: Restif, Olivier, et al.
Publicado: (2013)

Erratum to: A benchmark for RNA-seq quantification pipelines
por: Teng, Mingxiang, et al.
Publicado: (2016)

Erratum to: A benchmark for RNA-seq quantification pipelines
por: Teng, Mingxiang, et al.
Publicado: (2016)

Quantification of Temperature Dependence of Hydrogen Embrittlement in Pipeline Steel
por: Xing, Xiao, et al.
Publicado: (2019)

Exodus: sequencing-based pipeline for quantification of pooled variants
por: Vainberg-Slutskin, Ilya, et al.
Publicado: (2022)

In vivo magnetic resonance imaging of treatment-induced apoptosis
por: Jiang, Xiaoyu, et al.
Publicado: (2019)

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms
por: Erdem, Cemal, et al.
Publicado: (2023)

Utilizing 3-Dimensional Cardiac Models With Point-of-Care Ultrasound Video Tutorials to Improve Medical Student Education: A Double-Blinded Randomized Control Study
por: McKinley, Hillary, et al.
Publicado: (2023)

Not All Insults Are Created Equal for Awakening Dormant Stem Cell Abilities
por: Vega, Paige N., et al.
Publicado: (2019)

Long Term Follow Up of Male Breast Cancer
por: McKinley, N, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_bcbuhsr8n6numh10p4cc3ps3hi