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A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer

Gastric cancer is a heterogeneous group of diseases with only a fraction of patients responding to immunotherapy. The relationships between tumor DNA damage response, patient immune system and immunotherapy have recently attracted attention. Accumulating evidence suggests that DNA repair landscape i...

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Autores principales: Yuan, Binbin, Jiang, Chengfei, Chen, Lingyan, Wen, Lihui, Cui, Jinlong, Chen, Min, Zhang, Shu, Zhou, Lin, Cai, Yimeng, Mao, Jian-Hua, Zou, Xiaoping, Hang, Bo, Wang, Pin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9168368/
https://www.ncbi.nlm.nih.gov/pubmed/35676932
http://dx.doi.org/10.3389/fcell.2022.893546
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author Yuan, Binbin
Jiang, Chengfei
Chen, Lingyan
Wen, Lihui
Cui, Jinlong
Chen, Min
Zhang, Shu
Zhou, Lin
Cai, Yimeng
Mao, Jian-Hua
Zou, Xiaoping
Hang, Bo
Wang, Pin
author_facet Yuan, Binbin
Jiang, Chengfei
Chen, Lingyan
Wen, Lihui
Cui, Jinlong
Chen, Min
Zhang, Shu
Zhou, Lin
Cai, Yimeng
Mao, Jian-Hua
Zou, Xiaoping
Hang, Bo
Wang, Pin
author_sort Yuan, Binbin
collection PubMed
description Gastric cancer is a heterogeneous group of diseases with only a fraction of patients responding to immunotherapy. The relationships between tumor DNA damage response, patient immune system and immunotherapy have recently attracted attention. Accumulating evidence suggests that DNA repair landscape is a significant factor in driving response to immune checkpoint blockade (ICB) therapy. In this study, to explore new prognostic and predictive biomarkers for gastric cancer patients who are sensitive and responsive to immunotherapies, we developed a novel 15-DNA repair gene signature (DRGS) and its related scoring system and evaluated the efficiency of the DRGS in discriminating different molecular and immune characteristics and therapeutic outcomes of patients with gastric adenocarcinoma, using publicly available datasets. The results demonstrated that DRGS high score patients showed significantly better therapeutic outcomes for ICB compared to DRGS low score patients (p < 0.001). Integrated analysis of multi-omics data demonstrated that the patients with high DRGS score were characteristic of high levels of anti-tumor lymphocyte infiltration, tumor mutation burden (TMB) and PD-L1 expression, and these patients exhibited a longer overall survival, as compared to the low-score patients. Results obtained from HPA and IHC supported significant dysregulation of the genes in DRGS in gastric cancer tissues, and a positive correlation in protein expression between DRGS and PD-L1. Therefore, the DRGS scoring system may have implications in tailoring immunotherapy in gastric cancers. A preprint has previously been published (Yuan et al., 2021).
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spelling pubmed-91683682022-06-07 A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer Yuan, Binbin Jiang, Chengfei Chen, Lingyan Wen, Lihui Cui, Jinlong Chen, Min Zhang, Shu Zhou, Lin Cai, Yimeng Mao, Jian-Hua Zou, Xiaoping Hang, Bo Wang, Pin Front Cell Dev Biol Cell and Developmental Biology Gastric cancer is a heterogeneous group of diseases with only a fraction of patients responding to immunotherapy. The relationships between tumor DNA damage response, patient immune system and immunotherapy have recently attracted attention. Accumulating evidence suggests that DNA repair landscape is a significant factor in driving response to immune checkpoint blockade (ICB) therapy. In this study, to explore new prognostic and predictive biomarkers for gastric cancer patients who are sensitive and responsive to immunotherapies, we developed a novel 15-DNA repair gene signature (DRGS) and its related scoring system and evaluated the efficiency of the DRGS in discriminating different molecular and immune characteristics and therapeutic outcomes of patients with gastric adenocarcinoma, using publicly available datasets. The results demonstrated that DRGS high score patients showed significantly better therapeutic outcomes for ICB compared to DRGS low score patients (p < 0.001). Integrated analysis of multi-omics data demonstrated that the patients with high DRGS score were characteristic of high levels of anti-tumor lymphocyte infiltration, tumor mutation burden (TMB) and PD-L1 expression, and these patients exhibited a longer overall survival, as compared to the low-score patients. Results obtained from HPA and IHC supported significant dysregulation of the genes in DRGS in gastric cancer tissues, and a positive correlation in protein expression between DRGS and PD-L1. Therefore, the DRGS scoring system may have implications in tailoring immunotherapy in gastric cancers. A preprint has previously been published (Yuan et al., 2021). Frontiers Media S.A. 2022-05-23 /pmc/articles/PMC9168368/ /pubmed/35676932 http://dx.doi.org/10.3389/fcell.2022.893546 Text en Copyright © 2022 Yuan, Jiang, Chen, Wen, Cui, Chen, Zhang, Zhou, Cai, Mao, Zou, Hang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Yuan, Binbin
Jiang, Chengfei
Chen, Lingyan
Wen, Lihui
Cui, Jinlong
Chen, Min
Zhang, Shu
Zhou, Lin
Cai, Yimeng
Mao, Jian-Hua
Zou, Xiaoping
Hang, Bo
Wang, Pin
A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title_full A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title_fullStr A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title_full_unstemmed A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title_short A Novel DNA Repair Gene Signature for Immune Checkpoint Inhibitor-Based Therapy in Gastric Cancer
title_sort novel dna repair gene signature for immune checkpoint inhibitor-based therapy in gastric cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9168368/
https://www.ncbi.nlm.nih.gov/pubmed/35676932
http://dx.doi.org/10.3389/fcell.2022.893546
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