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Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma

BACKGROUND: As an important non‐apoptotic cell death method, oncosis has been reported to be closely associated with tumors in recent years. However, few research reported the relationship between oncosis and lung cancer. METHODS: In this study, we established an oncosis‐based algorithm comprised of...

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Autores principales: Chen, Hang, Zhou, Chongchang, Hu, Zeyang, Sang, Menglu, Ni, Saiqi, Wu, Jiacheng, Pan, Qiaoling, Tong, Jingtao, Liu, Kaitai, Li, Ni, Zhu, Linwen, Xu, Guodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169186/
https://www.ncbi.nlm.nih.gov/pubmed/35476781
http://dx.doi.org/10.1002/jcla.24461
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author Chen, Hang
Zhou, Chongchang
Hu, Zeyang
Sang, Menglu
Ni, Saiqi
Wu, Jiacheng
Pan, Qiaoling
Tong, Jingtao
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
author_facet Chen, Hang
Zhou, Chongchang
Hu, Zeyang
Sang, Menglu
Ni, Saiqi
Wu, Jiacheng
Pan, Qiaoling
Tong, Jingtao
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
author_sort Chen, Hang
collection PubMed
description BACKGROUND: As an important non‐apoptotic cell death method, oncosis has been reported to be closely associated with tumors in recent years. However, few research reported the relationship between oncosis and lung cancer. METHODS: In this study, we established an oncosis‐based algorithm comprised of cluster grouping and a risk assessment model to predict the survival outcomes and related tumor immunity of patients with lung adenocarcinomas (LUAD). We selected 11 oncosis‐related lncRNAs associated with the prognosis (CARD8‐AS1, LINC00941, LINC01137, LINC01116, AC010980.2, LINC00324, AL365203.2, AL606489.1, AC004687.1, HLA‐DQB1‐AS1, and AL590226.1) to divide the LUAD patients into different clusters and different risk groups. Compared with patients in clsuter1, patients in cluster2 had a survival advantage and had a relatively more active tumor immunity. Subsequently, we constructed a risk assessment model to distinguish between patients into different risk groups, in which low‐risk patients tend to have a better prognosis. GO enrichment analysis revealed that the risk assessment model was closely related to immune activities. In addition, low‐risk patients tended to have a higher content of immune cells and stromal cells in tumor microenvironment, higher expression of PD‐1, CTLA‐4, HAVCR2, and were more sensitive to immune checkpoint inhibitors (ICIs), including PD‐1/CTLA‐4 inhibitors. The risk score had a significantly positive correlation with tumor mutation burden (TMB). The survival curve of the novel oncosis‐based algorithm suggested that low‐risk patients in cluster2 have the most obvious survival advantage. CONCLUSION: The novel oncosis‐based algorithm investigated the prognosis and the related tumor immunity of patients with LUAD, which could provide theoretical support for customized individual treatment for LUAD patients.
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spelling pubmed-91691862022-06-07 Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma Chen, Hang Zhou, Chongchang Hu, Zeyang Sang, Menglu Ni, Saiqi Wu, Jiacheng Pan, Qiaoling Tong, Jingtao Liu, Kaitai Li, Ni Zhu, Linwen Xu, Guodong J Clin Lab Anal Research Articles BACKGROUND: As an important non‐apoptotic cell death method, oncosis has been reported to be closely associated with tumors in recent years. However, few research reported the relationship between oncosis and lung cancer. METHODS: In this study, we established an oncosis‐based algorithm comprised of cluster grouping and a risk assessment model to predict the survival outcomes and related tumor immunity of patients with lung adenocarcinomas (LUAD). We selected 11 oncosis‐related lncRNAs associated with the prognosis (CARD8‐AS1, LINC00941, LINC01137, LINC01116, AC010980.2, LINC00324, AL365203.2, AL606489.1, AC004687.1, HLA‐DQB1‐AS1, and AL590226.1) to divide the LUAD patients into different clusters and different risk groups. Compared with patients in clsuter1, patients in cluster2 had a survival advantage and had a relatively more active tumor immunity. Subsequently, we constructed a risk assessment model to distinguish between patients into different risk groups, in which low‐risk patients tend to have a better prognosis. GO enrichment analysis revealed that the risk assessment model was closely related to immune activities. In addition, low‐risk patients tended to have a higher content of immune cells and stromal cells in tumor microenvironment, higher expression of PD‐1, CTLA‐4, HAVCR2, and were more sensitive to immune checkpoint inhibitors (ICIs), including PD‐1/CTLA‐4 inhibitors. The risk score had a significantly positive correlation with tumor mutation burden (TMB). The survival curve of the novel oncosis‐based algorithm suggested that low‐risk patients in cluster2 have the most obvious survival advantage. CONCLUSION: The novel oncosis‐based algorithm investigated the prognosis and the related tumor immunity of patients with LUAD, which could provide theoretical support for customized individual treatment for LUAD patients. John Wiley and Sons Inc. 2022-04-27 /pmc/articles/PMC9169186/ /pubmed/35476781 http://dx.doi.org/10.1002/jcla.24461 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Chen, Hang
Zhou, Chongchang
Hu, Zeyang
Sang, Menglu
Ni, Saiqi
Wu, Jiacheng
Pan, Qiaoling
Tong, Jingtao
Liu, Kaitai
Li, Ni
Zhu, Linwen
Xu, Guodong
Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title_full Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title_fullStr Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title_full_unstemmed Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title_short Construction of an algorithm based on oncosis‐related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
title_sort construction of an algorithm based on oncosis‐related lncrnas comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169186/
https://www.ncbi.nlm.nih.gov/pubmed/35476781
http://dx.doi.org/10.1002/jcla.24461
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