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Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma

BACKGROUND: Smoking is one of the most hazardous risk factors for the development of lung adenocarcinoma (LUAD). Many survival and prognosis‐related biomarkers were discovered using database mining. However, the precision of immune‐related long noncoding RNAs (lncRNAs) predictions is insufficient. W...

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Autores principales: Zhou, Dajie, Wang, Jing, Liu, Xiangdong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169227/
https://www.ncbi.nlm.nih.gov/pubmed/35561270
http://dx.doi.org/10.1002/jcla.24467
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author Zhou, Dajie
Wang, Jing
Liu, Xiangdong
author_facet Zhou, Dajie
Wang, Jing
Liu, Xiangdong
author_sort Zhou, Dajie
collection PubMed
description BACKGROUND: Smoking is one of the most hazardous risk factors for the development of lung adenocarcinoma (LUAD). Many survival and prognosis‐related biomarkers were discovered using database mining. However, the precision of immune‐related long noncoding RNAs (lncRNAs) predictions is insufficient. We identified a novel signature to improve the estimate of smoking‐related LUAD prognosis. METHODS: The Cancer Genome Atlas database (TCGA) was used to obtain the LUAD lncRNA expression profiles. The smoking‐related LUAD cohort was randomly split into discovery and validation cohorts. To determine the risk score, use the LASSO Cox regression technique on the prognostic immune‐related lncRNA. The risk signature has been developed. RESULTS: A total of 643 immune‐related lncRNAs were identified as potential candidates for a risk signature. Finally, six immune‐related lncRNAs (AL359915.2, AP000695.1, HSPC324, TGFB2‐AS1, AC026355.1, and AC002128.2) were identified and used to carry out risk signature, which showed a close association with overall survival in the discovery cohort. We classified patients as high risk or low risk based on a median risk score of 1.0783. In the discovery cohort, overall survival was marginally longer in the low‐risk group than in the high‐risk category (p = 2.28e08). The area under the curves (AUC) for 1‐, 3‐, and 5‐year survival was 0.67, 0.7, and 0.82, respectively. Furthermore, we successfully validated and combined cohorts using this risk profile. We discovered a strong positive connection between HSPC324 and VIPR1 as a possible novel biomarker for smoking‐related LUAD development in our study. CONCLUSIONS: Our research has established a six immune‐lncRNA signature that may be used to predict the prognosis of smoking‐related LUAD with great accuracy.
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spelling pubmed-91692272022-06-07 Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma Zhou, Dajie Wang, Jing Liu, Xiangdong J Clin Lab Anal Research Articles BACKGROUND: Smoking is one of the most hazardous risk factors for the development of lung adenocarcinoma (LUAD). Many survival and prognosis‐related biomarkers were discovered using database mining. However, the precision of immune‐related long noncoding RNAs (lncRNAs) predictions is insufficient. We identified a novel signature to improve the estimate of smoking‐related LUAD prognosis. METHODS: The Cancer Genome Atlas database (TCGA) was used to obtain the LUAD lncRNA expression profiles. The smoking‐related LUAD cohort was randomly split into discovery and validation cohorts. To determine the risk score, use the LASSO Cox regression technique on the prognostic immune‐related lncRNA. The risk signature has been developed. RESULTS: A total of 643 immune‐related lncRNAs were identified as potential candidates for a risk signature. Finally, six immune‐related lncRNAs (AL359915.2, AP000695.1, HSPC324, TGFB2‐AS1, AC026355.1, and AC002128.2) were identified and used to carry out risk signature, which showed a close association with overall survival in the discovery cohort. We classified patients as high risk or low risk based on a median risk score of 1.0783. In the discovery cohort, overall survival was marginally longer in the low‐risk group than in the high‐risk category (p = 2.28e08). The area under the curves (AUC) for 1‐, 3‐, and 5‐year survival was 0.67, 0.7, and 0.82, respectively. Furthermore, we successfully validated and combined cohorts using this risk profile. We discovered a strong positive connection between HSPC324 and VIPR1 as a possible novel biomarker for smoking‐related LUAD development in our study. CONCLUSIONS: Our research has established a six immune‐lncRNA signature that may be used to predict the prognosis of smoking‐related LUAD with great accuracy. John Wiley and Sons Inc. 2022-05-13 /pmc/articles/PMC9169227/ /pubmed/35561270 http://dx.doi.org/10.1002/jcla.24467 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Zhou, Dajie
Wang, Jing
Liu, Xiangdong
Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title_full Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title_fullStr Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title_full_unstemmed Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title_short Development of six immune‐related lncRNA signature prognostic model for smoking‐positive lung adenocarcinoma
title_sort development of six immune‐related lncrna signature prognostic model for smoking‐positive lung adenocarcinoma
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169227/
https://www.ncbi.nlm.nih.gov/pubmed/35561270
http://dx.doi.org/10.1002/jcla.24467
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