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X-ray driven peanut trait estimation: computer vision aided agri-system transformation

BACKGROUND: In India, raw peanuts are obtained by aggregators from smallholder farms in the form of whole pods and the price is based on a manual estimation of basic peanut pod and kernel characteristics. These methods of raw produce evaluation are slow and can result in procurement irregularities....

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Autores principales: Domhoefer, Martha, Chakraborty, Debarati, Hufnagel, Eva, Claußen, Joelle, Wörlein, Norbert, Voorhaar, Marijn, Anbazhagan, Krithika, Choudhary, Sunita, Pasupuleti, Janila, Baddam, Rekha, Kholova, Jana, Gerth, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169268/
https://www.ncbi.nlm.nih.gov/pubmed/35668530
http://dx.doi.org/10.1186/s13007-022-00909-8
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author Domhoefer, Martha
Chakraborty, Debarati
Hufnagel, Eva
Claußen, Joelle
Wörlein, Norbert
Voorhaar, Marijn
Anbazhagan, Krithika
Choudhary, Sunita
Pasupuleti, Janila
Baddam, Rekha
Kholova, Jana
Gerth, Stefan
author_facet Domhoefer, Martha
Chakraborty, Debarati
Hufnagel, Eva
Claußen, Joelle
Wörlein, Norbert
Voorhaar, Marijn
Anbazhagan, Krithika
Choudhary, Sunita
Pasupuleti, Janila
Baddam, Rekha
Kholova, Jana
Gerth, Stefan
author_sort Domhoefer, Martha
collection PubMed
description BACKGROUND: In India, raw peanuts are obtained by aggregators from smallholder farms in the form of whole pods and the price is based on a manual estimation of basic peanut pod and kernel characteristics. These methods of raw produce evaluation are slow and can result in procurement irregularities. The procurement delays combined with the lack of storage facilities lead to fungal contaminations and pose a serious threat to food safety in many regions. To address this gap, we investigated whether X-ray technology could be used for the rapid assessment of the key peanut qualities that are important for price estimation. RESULTS: We generated 1752 individual peanut pod 2D X-ray projections using a computed tomography (CT) system (CTportable160.90). Out of these projections we predicted the kernel weight and shell weight, which are important indicators of the produce price. Two methods for the feature prediction were tested: (i) X-ray image transformation (XRT) and (ii) a trained convolutional neural network (CNN). The prediction power of these methods was tested against the gravimetric measurements of kernel weight and shell weight in diverse peanut pod varieties(1). Both methods predicted the kernel mass with R(2) > 0.93 (XRT: R(2) = 0.93 and mean error estimate (MAE) = 0.17, CNN: R(2) = 0.95 and MAE = 0.14). While the shell weight was predicted more accurately by CNN (R(2) = 0.91, MAE = 0.09) compared to XRT (R(2) = 0.78; MAE = 0.08). CONCLUSION: Our study demonstrated that the X-ray based system is a relevant technology option for the estimation of key peanut produce indicators (Figure 1). The obtained results justify further research to adapt the existing X-ray system for the rapid, accurate and objective peanut procurement process. Fast and accurate estimates of produce value are a necessary pre-requisite to avoid post-harvest losses due to fungal contamination and, at the same time, allow the fair payment to farmers. Additionally, the same technology could also assist crop improvement programs in selecting and developing peanut cultivars with enhanced economic value in a high-throughput manner by skipping the shelling of the pods completely. This study demonstrated the technical feasibility of the approach and is a first step to realize a technology-driven peanut production system transformation of the future. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-022-00909-8.
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spelling pubmed-91692682022-06-07 X-ray driven peanut trait estimation: computer vision aided agri-system transformation Domhoefer, Martha Chakraborty, Debarati Hufnagel, Eva Claußen, Joelle Wörlein, Norbert Voorhaar, Marijn Anbazhagan, Krithika Choudhary, Sunita Pasupuleti, Janila Baddam, Rekha Kholova, Jana Gerth, Stefan Plant Methods Research BACKGROUND: In India, raw peanuts are obtained by aggregators from smallholder farms in the form of whole pods and the price is based on a manual estimation of basic peanut pod and kernel characteristics. These methods of raw produce evaluation are slow and can result in procurement irregularities. The procurement delays combined with the lack of storage facilities lead to fungal contaminations and pose a serious threat to food safety in many regions. To address this gap, we investigated whether X-ray technology could be used for the rapid assessment of the key peanut qualities that are important for price estimation. RESULTS: We generated 1752 individual peanut pod 2D X-ray projections using a computed tomography (CT) system (CTportable160.90). Out of these projections we predicted the kernel weight and shell weight, which are important indicators of the produce price. Two methods for the feature prediction were tested: (i) X-ray image transformation (XRT) and (ii) a trained convolutional neural network (CNN). The prediction power of these methods was tested against the gravimetric measurements of kernel weight and shell weight in diverse peanut pod varieties(1). Both methods predicted the kernel mass with R(2) > 0.93 (XRT: R(2) = 0.93 and mean error estimate (MAE) = 0.17, CNN: R(2) = 0.95 and MAE = 0.14). While the shell weight was predicted more accurately by CNN (R(2) = 0.91, MAE = 0.09) compared to XRT (R(2) = 0.78; MAE = 0.08). CONCLUSION: Our study demonstrated that the X-ray based system is a relevant technology option for the estimation of key peanut produce indicators (Figure 1). The obtained results justify further research to adapt the existing X-ray system for the rapid, accurate and objective peanut procurement process. Fast and accurate estimates of produce value are a necessary pre-requisite to avoid post-harvest losses due to fungal contamination and, at the same time, allow the fair payment to farmers. Additionally, the same technology could also assist crop improvement programs in selecting and developing peanut cultivars with enhanced economic value in a high-throughput manner by skipping the shelling of the pods completely. This study demonstrated the technical feasibility of the approach and is a first step to realize a technology-driven peanut production system transformation of the future. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-022-00909-8. BioMed Central 2022-06-06 /pmc/articles/PMC9169268/ /pubmed/35668530 http://dx.doi.org/10.1186/s13007-022-00909-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Domhoefer, Martha
Chakraborty, Debarati
Hufnagel, Eva
Claußen, Joelle
Wörlein, Norbert
Voorhaar, Marijn
Anbazhagan, Krithika
Choudhary, Sunita
Pasupuleti, Janila
Baddam, Rekha
Kholova, Jana
Gerth, Stefan
X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title_full X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title_fullStr X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title_full_unstemmed X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title_short X-ray driven peanut trait estimation: computer vision aided agri-system transformation
title_sort x-ray driven peanut trait estimation: computer vision aided agri-system transformation
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169268/
https://www.ncbi.nlm.nih.gov/pubmed/35668530
http://dx.doi.org/10.1186/s13007-022-00909-8
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