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A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy

BACKGROUND: Every year, more than 700,000 people die from vector-borne diseases, mainly transmitted by mosquitoes. Vector surveillance plays a major role in the control of these diseases and requires accurate and rapid taxonomical identification. New approaches to mosquito surveillance include the u...

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Autores principales: González-Pérez, María I., Faulhaber, Bastian, Williams, Mark, Brosa, Josep, Aranda, Carles, Pujol, Nuria, Verdún, Marta, Villalonga, Pancraç, Encarnação, Joao, Busquets, Núria, Talavera, Sandra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169302/
https://www.ncbi.nlm.nih.gov/pubmed/35668486
http://dx.doi.org/10.1186/s13071-022-05324-5
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author González-Pérez, María I.
Faulhaber, Bastian
Williams, Mark
Brosa, Josep
Aranda, Carles
Pujol, Nuria
Verdún, Marta
Villalonga, Pancraç
Encarnação, Joao
Busquets, Núria
Talavera, Sandra
author_facet González-Pérez, María I.
Faulhaber, Bastian
Williams, Mark
Brosa, Josep
Aranda, Carles
Pujol, Nuria
Verdún, Marta
Villalonga, Pancraç
Encarnação, Joao
Busquets, Núria
Talavera, Sandra
author_sort González-Pérez, María I.
collection PubMed
description BACKGROUND: Every year, more than 700,000 people die from vector-borne diseases, mainly transmitted by mosquitoes. Vector surveillance plays a major role in the control of these diseases and requires accurate and rapid taxonomical identification. New approaches to mosquito surveillance include the use of acoustic and optical sensors in combination with machine learning techniques to provide an automatic classification of mosquitoes based on their flight characteristics, including wingbeat frequency. The development and application of these methods could enable the remote monitoring of mosquito populations in the field, which could lead to significant improvements in vector surveillance. METHODS: A novel optical sensor prototype coupled to a commercial mosquito trap was tested in laboratory conditions for the automatic classification of mosquitoes by genus and sex. Recordings of > 4300 laboratory-reared mosquitoes of Aedes and Culex genera were made using the sensor. The chosen genera include mosquito species that have a major impact on public health in many parts of the world. Five features were extracted from each recording to form balanced datasets and used for the training and evaluation of five different machine learning algorithms to achieve the best model for mosquito classification. RESULTS: The best accuracy results achieved using machine learning were: 94.2% for genus classification, 99.4% for sex classification of Aedes, and 100% for sex classification of Culex. The best algorithms and features were deep neural network with spectrogram for genus classification and gradient boosting with Mel Frequency Cepstrum Coefficients among others for sex classification of either genus. CONCLUSIONS: To our knowledge, this is the first time that a sensor coupled to a standard mosquito suction trap has provided automatic classification of mosquito genus and sex with high accuracy using a large number of unique samples with class balance. This system represents an improvement of the state of the art in mosquito surveillance and encourages future use of the sensor for remote, real-time characterization of mosquito populations. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13071-022-05324-5.
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spelling pubmed-91693022022-06-07 A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy González-Pérez, María I. Faulhaber, Bastian Williams, Mark Brosa, Josep Aranda, Carles Pujol, Nuria Verdún, Marta Villalonga, Pancraç Encarnação, Joao Busquets, Núria Talavera, Sandra Parasit Vectors Research BACKGROUND: Every year, more than 700,000 people die from vector-borne diseases, mainly transmitted by mosquitoes. Vector surveillance plays a major role in the control of these diseases and requires accurate and rapid taxonomical identification. New approaches to mosquito surveillance include the use of acoustic and optical sensors in combination with machine learning techniques to provide an automatic classification of mosquitoes based on their flight characteristics, including wingbeat frequency. The development and application of these methods could enable the remote monitoring of mosquito populations in the field, which could lead to significant improvements in vector surveillance. METHODS: A novel optical sensor prototype coupled to a commercial mosquito trap was tested in laboratory conditions for the automatic classification of mosquitoes by genus and sex. Recordings of > 4300 laboratory-reared mosquitoes of Aedes and Culex genera were made using the sensor. The chosen genera include mosquito species that have a major impact on public health in many parts of the world. Five features were extracted from each recording to form balanced datasets and used for the training and evaluation of five different machine learning algorithms to achieve the best model for mosquito classification. RESULTS: The best accuracy results achieved using machine learning were: 94.2% for genus classification, 99.4% for sex classification of Aedes, and 100% for sex classification of Culex. The best algorithms and features were deep neural network with spectrogram for genus classification and gradient boosting with Mel Frequency Cepstrum Coefficients among others for sex classification of either genus. CONCLUSIONS: To our knowledge, this is the first time that a sensor coupled to a standard mosquito suction trap has provided automatic classification of mosquito genus and sex with high accuracy using a large number of unique samples with class balance. This system represents an improvement of the state of the art in mosquito surveillance and encourages future use of the sensor for remote, real-time characterization of mosquito populations. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13071-022-05324-5. BioMed Central 2022-06-06 /pmc/articles/PMC9169302/ /pubmed/35668486 http://dx.doi.org/10.1186/s13071-022-05324-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
González-Pérez, María I.
Faulhaber, Bastian
Williams, Mark
Brosa, Josep
Aranda, Carles
Pujol, Nuria
Verdún, Marta
Villalonga, Pancraç
Encarnação, Joao
Busquets, Núria
Talavera, Sandra
A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title_full A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title_fullStr A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title_full_unstemmed A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title_short A novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
title_sort novel optical sensor system for the automatic classification of mosquitoes by genus and sex with high levels of accuracy
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169302/
https://www.ncbi.nlm.nih.gov/pubmed/35668486
http://dx.doi.org/10.1186/s13071-022-05324-5
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