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Ultrafast isolated molecule imaging without crystallization

Crystallography is the standard for determining the atomic structure of molecules. Unfortunately, many interesting molecules, including an extensive array of biological macromolecules, do not form crystals. While ultrashort and intense X-ray pulses from free-electron lasers are promising for imaging...

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Autores principales: Ma, Zhuoran, Zou, Xiao, Zhao, Lingrong, Qi, Fengfeng, Jiang, Tao, Zhu, Pengfei, Xiang, Dao, Zhang, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169771/
https://www.ncbi.nlm.nih.gov/pubmed/35385356
http://dx.doi.org/10.1073/pnas.2122793119
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author Ma, Zhuoran
Zou, Xiao
Zhao, Lingrong
Qi, Fengfeng
Jiang, Tao
Zhu, Pengfei
Xiang, Dao
Zhang, Jie
author_facet Ma, Zhuoran
Zou, Xiao
Zhao, Lingrong
Qi, Fengfeng
Jiang, Tao
Zhu, Pengfei
Xiang, Dao
Zhang, Jie
author_sort Ma, Zhuoran
collection PubMed
description Crystallography is the standard for determining the atomic structure of molecules. Unfortunately, many interesting molecules, including an extensive array of biological macromolecules, do not form crystals. While ultrashort and intense X-ray pulses from free-electron lasers are promising for imaging single isolated molecules with the so-called “diffraction before destruction” technique, nanocrystals are still needed for producing sufficient scattering signal for structure retrieval as implemented in serial femtosecond crystallography. Here, we show that a femtosecond laser pulse train may be used to align an ensemble of isolated molecules to a high level transiently, such that the diffraction pattern from the highly aligned molecules resembles that of a single molecule, allowing one to retrieve its atomic structure with a coherent diffraction imaging technique. In our experiment with CO(2) molecules, a high degree of alignment is maintained for about 100 fs, and a precisely timed ultrashort relativistic electron beam from a table-top instrument is used to record the diffraction pattern within that duration. The diffraction pattern is further used to reconstruct the distribution of CO(2) molecules with atomic resolution. Our results mark a significant step toward imaging noncrystallized molecules with atomic resolution and open opportunities in the study and control of dynamics in the molecular frame that provide information inaccessible with randomly oriented molecules.
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spelling pubmed-91697712022-10-06 Ultrafast isolated molecule imaging without crystallization Ma, Zhuoran Zou, Xiao Zhao, Lingrong Qi, Fengfeng Jiang, Tao Zhu, Pengfei Xiang, Dao Zhang, Jie Proc Natl Acad Sci U S A Physical Sciences Crystallography is the standard for determining the atomic structure of molecules. Unfortunately, many interesting molecules, including an extensive array of biological macromolecules, do not form crystals. While ultrashort and intense X-ray pulses from free-electron lasers are promising for imaging single isolated molecules with the so-called “diffraction before destruction” technique, nanocrystals are still needed for producing sufficient scattering signal for structure retrieval as implemented in serial femtosecond crystallography. Here, we show that a femtosecond laser pulse train may be used to align an ensemble of isolated molecules to a high level transiently, such that the diffraction pattern from the highly aligned molecules resembles that of a single molecule, allowing one to retrieve its atomic structure with a coherent diffraction imaging technique. In our experiment with CO(2) molecules, a high degree of alignment is maintained for about 100 fs, and a precisely timed ultrashort relativistic electron beam from a table-top instrument is used to record the diffraction pattern within that duration. The diffraction pattern is further used to reconstruct the distribution of CO(2) molecules with atomic resolution. Our results mark a significant step toward imaging noncrystallized molecules with atomic resolution and open opportunities in the study and control of dynamics in the molecular frame that provide information inaccessible with randomly oriented molecules. National Academy of Sciences 2022-04-06 2022-04-12 /pmc/articles/PMC9169771/ /pubmed/35385356 http://dx.doi.org/10.1073/pnas.2122793119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Ma, Zhuoran
Zou, Xiao
Zhao, Lingrong
Qi, Fengfeng
Jiang, Tao
Zhu, Pengfei
Xiang, Dao
Zhang, Jie
Ultrafast isolated molecule imaging without crystallization
title Ultrafast isolated molecule imaging without crystallization
title_full Ultrafast isolated molecule imaging without crystallization
title_fullStr Ultrafast isolated molecule imaging without crystallization
title_full_unstemmed Ultrafast isolated molecule imaging without crystallization
title_short Ultrafast isolated molecule imaging without crystallization
title_sort ultrafast isolated molecule imaging without crystallization
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9169771/
https://www.ncbi.nlm.nih.gov/pubmed/35385356
http://dx.doi.org/10.1073/pnas.2122793119
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