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Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation

Neritids are ancient gastropod species which can live in marine, brackish water, and freshwater environments. In this study, we sequenced and annotated the mitochondrial genomes of five brackish water neritids (i.e., Clithon corona, Clithon lentiginosum, Clithon squarrosum, Neritina iris, and Septar...

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Autores principales: Miao, Jing, Feng, Jiantong, Liu, Xiaojuan, Yan, Chengrui, Ye, Yingying, Li, Jiji, Xu, Kaida, Guo, Baoying, Lü, Zhenming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9170520/
https://www.ncbi.nlm.nih.gov/pubmed/35784089
http://dx.doi.org/10.1002/ece3.8984
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author Miao, Jing
Feng, Jiantong
Liu, Xiaojuan
Yan, Chengrui
Ye, Yingying
Li, Jiji
Xu, Kaida
Guo, Baoying
Lü, Zhenming
author_facet Miao, Jing
Feng, Jiantong
Liu, Xiaojuan
Yan, Chengrui
Ye, Yingying
Li, Jiji
Xu, Kaida
Guo, Baoying
Lü, Zhenming
author_sort Miao, Jing
collection PubMed
description Neritids are ancient gastropod species which can live in marine, brackish water, and freshwater environments. In this study, we sequenced and annotated the mitochondrial genomes of five brackish water neritids (i.e., Clithon corona, Clithon lentiginosum, Clithon squarrosum, Neritina iris, and Septaria lineata). The mitogenomes ranged from 15,618 to 15,975 bp, and all contain 13 protein‐coding genes (PCGs), 22 tRNA genes, and two rRNA genes, with a closed ring structure. We calculated the Ka/Ks values of all 13 PCGs of Neritidae species, all ratios are less than 1, under purification selection. Phylogenetic analysis of the 13 PCGs showed that Neritimorpha is a sister group with Vetigastropoda and Caenogastopoda, genus Clithon is a sister group with Neritina and Septaria. Estimation of divergence time for all species of Neritidae showed that the main differentiation of Neritidae occurred in Cenozoic period (65 Mya), C. corona and C. lentiginosum were differentiated in the Cenozoic Neogene, the other three species diverged in the Cenozoic Paleogene. These results will help to better understand the evolutionary position of Neritidae and provide reference for further phylogenetic research on Neritidae species.
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spelling pubmed-91705202022-07-01 Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation Miao, Jing Feng, Jiantong Liu, Xiaojuan Yan, Chengrui Ye, Yingying Li, Jiji Xu, Kaida Guo, Baoying Lü, Zhenming Ecol Evol Research Articles Neritids are ancient gastropod species which can live in marine, brackish water, and freshwater environments. In this study, we sequenced and annotated the mitochondrial genomes of five brackish water neritids (i.e., Clithon corona, Clithon lentiginosum, Clithon squarrosum, Neritina iris, and Septaria lineata). The mitogenomes ranged from 15,618 to 15,975 bp, and all contain 13 protein‐coding genes (PCGs), 22 tRNA genes, and two rRNA genes, with a closed ring structure. We calculated the Ka/Ks values of all 13 PCGs of Neritidae species, all ratios are less than 1, under purification selection. Phylogenetic analysis of the 13 PCGs showed that Neritimorpha is a sister group with Vetigastropoda and Caenogastopoda, genus Clithon is a sister group with Neritina and Septaria. Estimation of divergence time for all species of Neritidae showed that the main differentiation of Neritidae occurred in Cenozoic period (65 Mya), C. corona and C. lentiginosum were differentiated in the Cenozoic Neogene, the other three species diverged in the Cenozoic Paleogene. These results will help to better understand the evolutionary position of Neritidae and provide reference for further phylogenetic research on Neritidae species. John Wiley and Sons Inc. 2022-06-06 /pmc/articles/PMC9170520/ /pubmed/35784089 http://dx.doi.org/10.1002/ece3.8984 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Miao, Jing
Feng, Jiantong
Liu, Xiaojuan
Yan, Chengrui
Ye, Yingying
Li, Jiji
Xu, Kaida
Guo, Baoying
Lü, Zhenming
Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title_full Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title_fullStr Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title_full_unstemmed Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title_short Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation
title_sort sequence comparison of the mitochondrial genomes of five brackish water species of the family neritidae: phylogenetic implications and divergence time estimation
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9170520/
https://www.ncbi.nlm.nih.gov/pubmed/35784089
http://dx.doi.org/10.1002/ece3.8984
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