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fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value

Hypothesis testing is a central statistical method in psychology and the cognitive sciences. However, the problems of null hypothesis significance testing (NHST) and p values have been debated widely, but few attractive alternatives exist. This article introduces the fbst R package, which implements...

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Autor principal: Kelter, Riko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9170675/
https://www.ncbi.nlm.nih.gov/pubmed/34471963
http://dx.doi.org/10.3758/s13428-021-01613-6
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author Kelter, Riko
author_facet Kelter, Riko
author_sort Kelter, Riko
collection PubMed
description Hypothesis testing is a central statistical method in psychology and the cognitive sciences. However, the problems of null hypothesis significance testing (NHST) and p values have been debated widely, but few attractive alternatives exist. This article introduces the fbst R package, which implements the Full Bayesian Significance Test (FBST) to test a sharp null hypothesis against its alternative via the e value. The statistical theory of the FBST has been introduced more than two decades ago and since then the FBST has shown to be a Bayesian alternative to NHST and p values with both theoretical and practical highly appealing properties. The algorithm provided in the fbst package is applicable to any Bayesian model as long as the posterior distribution can be obtained at least numerically. The core function of the package provides the Bayesian evidence against the null hypothesis, the e value. Additionally, p values based on asymptotic arguments can be computed and rich visualizations for communication and interpretation of the results can be produced. Three examples of frequently used statistical procedures in the cognitive sciences are given in this paper, which demonstrate how to apply the FBST in practice using the fbst package. Based on the success of the FBST in statistical science, the fbst package should be of interest to a broad range of researchers and hopefully will encourage researchers to consider the FBST as a possible alternative when conducting hypothesis tests of a sharp null hypothesis.
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spelling pubmed-91706752022-06-08 fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value Kelter, Riko Behav Res Methods Article Hypothesis testing is a central statistical method in psychology and the cognitive sciences. However, the problems of null hypothesis significance testing (NHST) and p values have been debated widely, but few attractive alternatives exist. This article introduces the fbst R package, which implements the Full Bayesian Significance Test (FBST) to test a sharp null hypothesis against its alternative via the e value. The statistical theory of the FBST has been introduced more than two decades ago and since then the FBST has shown to be a Bayesian alternative to NHST and p values with both theoretical and practical highly appealing properties. The algorithm provided in the fbst package is applicable to any Bayesian model as long as the posterior distribution can be obtained at least numerically. The core function of the package provides the Bayesian evidence against the null hypothesis, the e value. Additionally, p values based on asymptotic arguments can be computed and rich visualizations for communication and interpretation of the results can be produced. Three examples of frequently used statistical procedures in the cognitive sciences are given in this paper, which demonstrate how to apply the FBST in practice using the fbst package. Based on the success of the FBST in statistical science, the fbst package should be of interest to a broad range of researchers and hopefully will encourage researchers to consider the FBST as a possible alternative when conducting hypothesis tests of a sharp null hypothesis. Springer US 2021-09-01 2022 /pmc/articles/PMC9170675/ /pubmed/34471963 http://dx.doi.org/10.3758/s13428-021-01613-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kelter, Riko
fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title_full fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title_fullStr fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title_full_unstemmed fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title_short fbst: An R package for the Full Bayesian Significance Test for testing a sharp null hypothesis against its alternative via the e value
title_sort fbst: an r package for the full bayesian significance test for testing a sharp null hypothesis against its alternative via the e value
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9170675/
https://www.ncbi.nlm.nih.gov/pubmed/34471963
http://dx.doi.org/10.3758/s13428-021-01613-6
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