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CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals

Electron diffraction enables structure determination of organic small molecules using crystals that are too small for conventional X-ray crystallography. However, because of uncertainties in the experimental parameters, notably the detector distance, the unit-cell parameters and the geometry of the...

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Autores principales: Gruene, Tim, Clabbers, Max T. B., Luebben, Jens, Chin, Jia Min, Reithofer, Michael R., Stowasser, Frank, Alker, André M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9172032/
https://www.ncbi.nlm.nih.gov/pubmed/35719299
http://dx.doi.org/10.1107/S160057672200276X
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author Gruene, Tim
Clabbers, Max T. B.
Luebben, Jens
Chin, Jia Min
Reithofer, Michael R.
Stowasser, Frank
Alker, André M.
author_facet Gruene, Tim
Clabbers, Max T. B.
Luebben, Jens
Chin, Jia Min
Reithofer, Michael R.
Stowasser, Frank
Alker, André M.
author_sort Gruene, Tim
collection PubMed
description Electron diffraction enables structure determination of organic small molecules using crystals that are too small for conventional X-ray crystallography. However, because of uncertainties in the experimental parameters, notably the detector distance, the unit-cell parameters and the geometry of the structural models are typically less accurate and precise compared with results obtained by X-ray diffraction. Here, an iterative procedure to optimize the unit-cell parameters obtained from electron diffraction using idealized restraints is proposed. The cell optimization routine has been implemented as part of the structure refinement, and a gradual improvement in lattice parameters and data quality is demonstrated. It is shown that cell optimization, optionally combined with geometrical corrections for any apparent detector distortions, benefits refinement of electron diffraction data in small-molecule crystallography and leads to more accurate structural models.
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spelling pubmed-91720322022-06-17 CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals Gruene, Tim Clabbers, Max T. B. Luebben, Jens Chin, Jia Min Reithofer, Michael R. Stowasser, Frank Alker, André M. J Appl Crystallogr Computer Programs Electron diffraction enables structure determination of organic small molecules using crystals that are too small for conventional X-ray crystallography. However, because of uncertainties in the experimental parameters, notably the detector distance, the unit-cell parameters and the geometry of the structural models are typically less accurate and precise compared with results obtained by X-ray diffraction. Here, an iterative procedure to optimize the unit-cell parameters obtained from electron diffraction using idealized restraints is proposed. The cell optimization routine has been implemented as part of the structure refinement, and a gradual improvement in lattice parameters and data quality is demonstrated. It is shown that cell optimization, optionally combined with geometrical corrections for any apparent detector distortions, benefits refinement of electron diffraction data in small-molecule crystallography and leads to more accurate structural models. International Union of Crystallography 2022-04-29 /pmc/articles/PMC9172032/ /pubmed/35719299 http://dx.doi.org/10.1107/S160057672200276X Text en © Tim Gruene et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Computer Programs
Gruene, Tim
Clabbers, Max T. B.
Luebben, Jens
Chin, Jia Min
Reithofer, Michael R.
Stowasser, Frank
Alker, André M.
CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title_full CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title_fullStr CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title_full_unstemmed CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title_short CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
title_sort cellopt: improved unit-cell parameters for electron diffraction data of small-molecule crystals
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9172032/
https://www.ncbi.nlm.nih.gov/pubmed/35719299
http://dx.doi.org/10.1107/S160057672200276X
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