Cargando…
Predicting reaction conditions from limited data through active transfer learning
Transfer and active learning have the potential to accelerate the development of new chemical reactions, using prior data and new experiments to inform models that adapt to the target area of interest. This article shows how specifically tuned machine learning models, based on random forest classifi...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9172577/ https://www.ncbi.nlm.nih.gov/pubmed/35756521 http://dx.doi.org/10.1039/d1sc06932b |
_version_ | 1784721901848887296 |
---|---|
author | Shim, Eunjae Kammeraad, Joshua A. Xu, Ziping Tewari, Ambuj Cernak, Tim Zimmerman, Paul M. |
author_facet | Shim, Eunjae Kammeraad, Joshua A. Xu, Ziping Tewari, Ambuj Cernak, Tim Zimmerman, Paul M. |
author_sort | Shim, Eunjae |
collection | PubMed |
description | Transfer and active learning have the potential to accelerate the development of new chemical reactions, using prior data and new experiments to inform models that adapt to the target area of interest. This article shows how specifically tuned machine learning models, based on random forest classifiers, can expand the applicability of Pd-catalyzed cross-coupling reactions to types of nucleophiles unknown to the model. First, model transfer is shown to be effective when reaction mechanisms and substrates are closely related, even when models are trained on relatively small numbers of data points. Then, a model simplification scheme is tested and found to provide comparative predictivity on reactions of new nucleophiles that include unseen reagent combinations. Lastly, for a challenging target where model transfer only provides a modest benefit over random selection, an active transfer learning strategy is introduced to improve model predictions. Simple models, composed of a small number of decision trees with limited depths, are crucial for securing generalizability, interpretability, and performance of active transfer learning. |
format | Online Article Text |
id | pubmed-9172577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-91725772022-06-23 Predicting reaction conditions from limited data through active transfer learning Shim, Eunjae Kammeraad, Joshua A. Xu, Ziping Tewari, Ambuj Cernak, Tim Zimmerman, Paul M. Chem Sci Chemistry Transfer and active learning have the potential to accelerate the development of new chemical reactions, using prior data and new experiments to inform models that adapt to the target area of interest. This article shows how specifically tuned machine learning models, based on random forest classifiers, can expand the applicability of Pd-catalyzed cross-coupling reactions to types of nucleophiles unknown to the model. First, model transfer is shown to be effective when reaction mechanisms and substrates are closely related, even when models are trained on relatively small numbers of data points. Then, a model simplification scheme is tested and found to provide comparative predictivity on reactions of new nucleophiles that include unseen reagent combinations. Lastly, for a challenging target where model transfer only provides a modest benefit over random selection, an active transfer learning strategy is introduced to improve model predictions. Simple models, composed of a small number of decision trees with limited depths, are crucial for securing generalizability, interpretability, and performance of active transfer learning. The Royal Society of Chemistry 2022-05-11 /pmc/articles/PMC9172577/ /pubmed/35756521 http://dx.doi.org/10.1039/d1sc06932b Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Shim, Eunjae Kammeraad, Joshua A. Xu, Ziping Tewari, Ambuj Cernak, Tim Zimmerman, Paul M. Predicting reaction conditions from limited data through active transfer learning |
title | Predicting reaction conditions from limited data through active transfer learning |
title_full | Predicting reaction conditions from limited data through active transfer learning |
title_fullStr | Predicting reaction conditions from limited data through active transfer learning |
title_full_unstemmed | Predicting reaction conditions from limited data through active transfer learning |
title_short | Predicting reaction conditions from limited data through active transfer learning |
title_sort | predicting reaction conditions from limited data through active transfer learning |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9172577/ https://www.ncbi.nlm.nih.gov/pubmed/35756521 http://dx.doi.org/10.1039/d1sc06932b |
work_keys_str_mv | AT shimeunjae predictingreactionconditionsfromlimiteddatathroughactivetransferlearning AT kammeraadjoshuaa predictingreactionconditionsfromlimiteddatathroughactivetransferlearning AT xuziping predictingreactionconditionsfromlimiteddatathroughactivetransferlearning AT tewariambuj predictingreactionconditionsfromlimiteddatathroughactivetransferlearning AT cernaktim predictingreactionconditionsfromlimiteddatathroughactivetransferlearning AT zimmermanpaulm predictingreactionconditionsfromlimiteddatathroughactivetransferlearning |