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Existence of twisting in dislocation-free protein single crystals

The growth of high-quality protein crystals is a prerequisite for the structure analysis of proteins by X-ray diffraction. However, dislocation-free perfect crystals such as silicon and diamond have been so far limited to only two kinds of protein crystals, such as glucose isomerase and ferritin cry...

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Autores principales: Abe, Marina, Suzuki, Ryo, Hirano, Keiichi, Koizumi, Haruhiko, Kojima, Kenichi, Tachibana, Masaru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9173801/
https://www.ncbi.nlm.nih.gov/pubmed/35576465
http://dx.doi.org/10.1073/pnas.2120846119
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author Abe, Marina
Suzuki, Ryo
Hirano, Keiichi
Koizumi, Haruhiko
Kojima, Kenichi
Tachibana, Masaru
author_facet Abe, Marina
Suzuki, Ryo
Hirano, Keiichi
Koizumi, Haruhiko
Kojima, Kenichi
Tachibana, Masaru
author_sort Abe, Marina
collection PubMed
description The growth of high-quality protein crystals is a prerequisite for the structure analysis of proteins by X-ray diffraction. However, dislocation-free perfect crystals such as silicon and diamond have been so far limited to only two kinds of protein crystals, such as glucose isomerase and ferritin crystals. It is expected that many other high-quality or dislocation-free protein crystals still exhibit some imperfection. The clarification of the cause of imperfection is essential for the improvement of crystallinity. Here, we explore twisting as a cause of the imperfection in high-quality protein crystals of hen egg-white lysozyme crystals with polymorphisms (different crystal forms) by digital X-ray topography with synchrotron radiation. The magnitude of the observed twisting is 10(−6) to 10(−5)°/μm which is more than two orders smaller than 10(−3) to 10(4)°/μm in other twisted crystals owing to technique limitations with optical and electron microscopy. Twisting is clearly observed in small crystals or in the initial stage of crystal growth. It is uniformly relaxed with crystal growth and becomes smaller in larger crystals. Twisting is one of main residual defects in high-quality crystals and determines the crystal perfection. Furthermore, it is presumed that the handedness of twisting can be ascribed to the anisotropic interaction of chiral protein molecules associated with asymmetric units in the crystal forms. This mechanism of twisting may correspond to the geometric frustration proposed as a primary mechanism of twisting in molecular crystals. Our finding provides insights for the understanding of growth mechanism and the growth control of high-quality crystals.
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spelling pubmed-91738012022-11-16 Existence of twisting in dislocation-free protein single crystals Abe, Marina Suzuki, Ryo Hirano, Keiichi Koizumi, Haruhiko Kojima, Kenichi Tachibana, Masaru Proc Natl Acad Sci U S A Physical Sciences The growth of high-quality protein crystals is a prerequisite for the structure analysis of proteins by X-ray diffraction. However, dislocation-free perfect crystals such as silicon and diamond have been so far limited to only two kinds of protein crystals, such as glucose isomerase and ferritin crystals. It is expected that many other high-quality or dislocation-free protein crystals still exhibit some imperfection. The clarification of the cause of imperfection is essential for the improvement of crystallinity. Here, we explore twisting as a cause of the imperfection in high-quality protein crystals of hen egg-white lysozyme crystals with polymorphisms (different crystal forms) by digital X-ray topography with synchrotron radiation. The magnitude of the observed twisting is 10(−6) to 10(−5)°/μm which is more than two orders smaller than 10(−3) to 10(4)°/μm in other twisted crystals owing to technique limitations with optical and electron microscopy. Twisting is clearly observed in small crystals or in the initial stage of crystal growth. It is uniformly relaxed with crystal growth and becomes smaller in larger crystals. Twisting is one of main residual defects in high-quality crystals and determines the crystal perfection. Furthermore, it is presumed that the handedness of twisting can be ascribed to the anisotropic interaction of chiral protein molecules associated with asymmetric units in the crystal forms. This mechanism of twisting may correspond to the geometric frustration proposed as a primary mechanism of twisting in molecular crystals. Our finding provides insights for the understanding of growth mechanism and the growth control of high-quality crystals. National Academy of Sciences 2022-05-16 2022-05-24 /pmc/articles/PMC9173801/ /pubmed/35576465 http://dx.doi.org/10.1073/pnas.2120846119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Abe, Marina
Suzuki, Ryo
Hirano, Keiichi
Koizumi, Haruhiko
Kojima, Kenichi
Tachibana, Masaru
Existence of twisting in dislocation-free protein single crystals
title Existence of twisting in dislocation-free protein single crystals
title_full Existence of twisting in dislocation-free protein single crystals
title_fullStr Existence of twisting in dislocation-free protein single crystals
title_full_unstemmed Existence of twisting in dislocation-free protein single crystals
title_short Existence of twisting in dislocation-free protein single crystals
title_sort existence of twisting in dislocation-free protein single crystals
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9173801/
https://www.ncbi.nlm.nih.gov/pubmed/35576465
http://dx.doi.org/10.1073/pnas.2120846119
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