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Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis

A high proportion of critically ill patients with coronavirus disease 2019 (COVID-19) experience thrombosis, and there is a strong correlation between anticoagulant therapy and the COVID-19 survival rate, indicating that common COVID-19 and thrombosis targets have potential therapeutic value for sev...

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Detalles Bibliográficos
Autores principales: Qi, Peng, Huang, Mengjie, Li, Tanshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9174658/
https://www.ncbi.nlm.nih.gov/pubmed/35692833
http://dx.doi.org/10.3389/fgene.2022.889348
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author Qi, Peng
Huang, Mengjie
Li, Tanshi
author_facet Qi, Peng
Huang, Mengjie
Li, Tanshi
author_sort Qi, Peng
collection PubMed
description A high proportion of critically ill patients with coronavirus disease 2019 (COVID-19) experience thrombosis, and there is a strong correlation between anticoagulant therapy and the COVID-19 survival rate, indicating that common COVID-19 and thrombosis targets have potential therapeutic value for severe COVID-19.Gene expression profiling data were downloaded from Gene Expression Omnibus (GEO), and common differentially expressed genes (co-DEGs) were identified. The potential biological functions of these co-DEGs were explored by functional enrichment analysis, and protein–protein interaction (PPI) networks were constructed to elucidate the molecular mechanisms of the co-DEGs. Finally, hub genes in the co-DEG network were identified, and correlation analysis was performed.We identified 8320 upregulated genes and 7651 downregulated genes from blood samples of COVID-19 patients and 368 upregulated genes and 240 downregulated genes from blood samples of thrombosis patients. The enriched cellular component terms were mainly related to cytosolic ribosomes and ribosomal subunits. The enriched molecular function terms were mainly related to structural constituents of ribosomes and electron transfer activity. Construction of the PPI network and identification of hub genes ultimately confirmed that RPS7, IGF1R, DICER1, ERH, MCTS1, and TNPO1 were jointly upregulated hub genes, and FLNA and PXN were jointly downregulated hub genes.The identification of novel potential biomarkers provides new options for treating COVID-19-related thrombosis and reducing the rate of severe COVID-19.
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spelling pubmed-91746582022-06-09 Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis Qi, Peng Huang, Mengjie Li, Tanshi Front Genet Genetics A high proportion of critically ill patients with coronavirus disease 2019 (COVID-19) experience thrombosis, and there is a strong correlation between anticoagulant therapy and the COVID-19 survival rate, indicating that common COVID-19 and thrombosis targets have potential therapeutic value for severe COVID-19.Gene expression profiling data were downloaded from Gene Expression Omnibus (GEO), and common differentially expressed genes (co-DEGs) were identified. The potential biological functions of these co-DEGs were explored by functional enrichment analysis, and protein–protein interaction (PPI) networks were constructed to elucidate the molecular mechanisms of the co-DEGs. Finally, hub genes in the co-DEG network were identified, and correlation analysis was performed.We identified 8320 upregulated genes and 7651 downregulated genes from blood samples of COVID-19 patients and 368 upregulated genes and 240 downregulated genes from blood samples of thrombosis patients. The enriched cellular component terms were mainly related to cytosolic ribosomes and ribosomal subunits. The enriched molecular function terms were mainly related to structural constituents of ribosomes and electron transfer activity. Construction of the PPI network and identification of hub genes ultimately confirmed that RPS7, IGF1R, DICER1, ERH, MCTS1, and TNPO1 were jointly upregulated hub genes, and FLNA and PXN were jointly downregulated hub genes.The identification of novel potential biomarkers provides new options for treating COVID-19-related thrombosis and reducing the rate of severe COVID-19. Frontiers Media S.A. 2022-05-25 /pmc/articles/PMC9174658/ /pubmed/35692833 http://dx.doi.org/10.3389/fgene.2022.889348 Text en Copyright © 2022 Qi, Huang and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Qi, Peng
Huang, Mengjie
Li, Tanshi
Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title_full Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title_fullStr Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title_full_unstemmed Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title_short Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
title_sort screening the potential biomarkers of covid-19-related thrombosis through bioinformatics analysis
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9174658/
https://www.ncbi.nlm.nih.gov/pubmed/35692833
http://dx.doi.org/10.3389/fgene.2022.889348
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