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Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas
Background: Gliomas are the most refractory intracranial disease characterized by high incidence and mortality rates. Therefore, radiotherapy plays a crucial role in the treatment of gliomas. However, recent evidence reveals that ferroptosis is highly associated with radiosensitivity in tumor cells....
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9174846/ https://www.ncbi.nlm.nih.gov/pubmed/35711838 http://dx.doi.org/10.7150/jca.72893 |
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author | Xie, Yandong Xiao, Yong Liu, Yuyang Lu, Xueying Wang, Zhen Sun, Shuo Liu, Liang Tang, Xianglong Xiao, Hong Liu, Hongyi |
author_facet | Xie, Yandong Xiao, Yong Liu, Yuyang Lu, Xueying Wang, Zhen Sun, Shuo Liu, Liang Tang, Xianglong Xiao, Hong Liu, Hongyi |
author_sort | Xie, Yandong |
collection | PubMed |
description | Background: Gliomas are the most refractory intracranial disease characterized by high incidence and mortality rates. Therefore, radiotherapy plays a crucial role in the treatment of gliomas. However, recent evidence reveals that ferroptosis is highly associated with radiosensitivity in tumor cells. Therefore, this study aimed to investigate radiosensitivity- and ferroptosis-associated biomarkers. Moreover, the study aimed to provide new strategies for the treatment and evaluation of prognosis in gliomas. Methods: The mRNA sequencing and relevant clinical data were obtained from The Cancer Genome Atlas (TCGA). Secondly, differential analysis was conducted to reveal the radiosensitivity- and ferroptosis-associated differentially expressed genes (DEGs). Further, a predictive model based on the seven genes was constructed, and LASSO regression analysis was carried out. After that, the Chinese Glioma Genome Atlas (CGGA) was used for validation of the results. Results: A total of 36 radiosensitivity- and 19 ferroptosis-associated DEGs with a prognostic value were identified. Moreover, seven intersecting genes (HSPB1, STAT3, CA9, MAP1LC3A, MAPK1, ZEB1, and TNFAIP3) were identified as the risk signature genes. The ROC curves and K-M analysis revealed that the signature genes showed a good survival prediction. Furthermore, the functional analysis revealed that the differentially expressed genes between the high-risk and the low-risk groups were enriched in glioma-related biological processes. In addition, differences were reported in immune function status between the two groups. Conclusion: This study revealed that the seven biomarkers could help predict the prognosis in glioma patients. In addition, this study provides a basis for understanding the molecular mechanisms of radiosensitivity and ferroptosis in the treatment of gliomas. |
format | Online Article Text |
id | pubmed-9174846 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-91748462022-06-15 Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas Xie, Yandong Xiao, Yong Liu, Yuyang Lu, Xueying Wang, Zhen Sun, Shuo Liu, Liang Tang, Xianglong Xiao, Hong Liu, Hongyi J Cancer Research Paper Background: Gliomas are the most refractory intracranial disease characterized by high incidence and mortality rates. Therefore, radiotherapy plays a crucial role in the treatment of gliomas. However, recent evidence reveals that ferroptosis is highly associated with radiosensitivity in tumor cells. Therefore, this study aimed to investigate radiosensitivity- and ferroptosis-associated biomarkers. Moreover, the study aimed to provide new strategies for the treatment and evaluation of prognosis in gliomas. Methods: The mRNA sequencing and relevant clinical data were obtained from The Cancer Genome Atlas (TCGA). Secondly, differential analysis was conducted to reveal the radiosensitivity- and ferroptosis-associated differentially expressed genes (DEGs). Further, a predictive model based on the seven genes was constructed, and LASSO regression analysis was carried out. After that, the Chinese Glioma Genome Atlas (CGGA) was used for validation of the results. Results: A total of 36 radiosensitivity- and 19 ferroptosis-associated DEGs with a prognostic value were identified. Moreover, seven intersecting genes (HSPB1, STAT3, CA9, MAP1LC3A, MAPK1, ZEB1, and TNFAIP3) were identified as the risk signature genes. The ROC curves and K-M analysis revealed that the signature genes showed a good survival prediction. Furthermore, the functional analysis revealed that the differentially expressed genes between the high-risk and the low-risk groups were enriched in glioma-related biological processes. In addition, differences were reported in immune function status between the two groups. Conclusion: This study revealed that the seven biomarkers could help predict the prognosis in glioma patients. In addition, this study provides a basis for understanding the molecular mechanisms of radiosensitivity and ferroptosis in the treatment of gliomas. Ivyspring International Publisher 2022-05-20 /pmc/articles/PMC9174846/ /pubmed/35711838 http://dx.doi.org/10.7150/jca.72893 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Xie, Yandong Xiao, Yong Liu, Yuyang Lu, Xueying Wang, Zhen Sun, Shuo Liu, Liang Tang, Xianglong Xiao, Hong Liu, Hongyi Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title | Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title_full | Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title_fullStr | Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title_full_unstemmed | Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title_short | Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
title_sort | construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9174846/ https://www.ncbi.nlm.nih.gov/pubmed/35711838 http://dx.doi.org/10.7150/jca.72893 |
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