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Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176338/ https://www.ncbi.nlm.nih.gov/pubmed/35692644 http://dx.doi.org/10.1080/23802359.2022.2079106 |
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author | Xu, Xinhan Yao, Xuan Zhang, Caijuan Xia, Pengguo |
author_facet | Xu, Xinhan Yao, Xuan Zhang, Caijuan Xia, Pengguo |
author_sort | Xu, Xinhan |
collection | PubMed |
description | Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The complete genome is 155,170 bp in length, including a large single-copy region (LSC) of 84,270 bp, a small single-copy region (SSC) of 17,918 bp and two copies of inverted repeat (IR) regions of 26,491 bp. The overall GC content of C. lyrata is 36.2%. The genome of C. lyrata contains 131 genes, including 85 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis suggested that the ten species in Cardamine were clustered together into a single branch within the Brassicaceae family and C. amariformis is at the base of the tree and C. lyrata and C. fallax are sister groups of the inner clade. |
format | Online Article Text |
id | pubmed-9176338 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-91763382022-06-09 Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) Xu, Xinhan Yao, Xuan Zhang, Caijuan Xia, Pengguo Mitochondrial DNA B Resour Plastome Announcement Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The complete genome is 155,170 bp in length, including a large single-copy region (LSC) of 84,270 bp, a small single-copy region (SSC) of 17,918 bp and two copies of inverted repeat (IR) regions of 26,491 bp. The overall GC content of C. lyrata is 36.2%. The genome of C. lyrata contains 131 genes, including 85 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis suggested that the ten species in Cardamine were clustered together into a single branch within the Brassicaceae family and C. amariformis is at the base of the tree and C. lyrata and C. fallax are sister groups of the inner clade. Taylor & Francis 2022-06-02 /pmc/articles/PMC9176338/ /pubmed/35692644 http://dx.doi.org/10.1080/23802359.2022.2079106 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Xu, Xinhan Yao, Xuan Zhang, Caijuan Xia, Pengguo Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title | Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title_full | Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title_fullStr | Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title_short | Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) |
title_sort | characterization of the complete chloroplast genome sequence of cardamine lyrata bunge(brassicaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176338/ https://www.ncbi.nlm.nih.gov/pubmed/35692644 http://dx.doi.org/10.1080/23802359.2022.2079106 |
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