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Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)

Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The...

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Autores principales: Xu, Xinhan, Yao, Xuan, Zhang, Caijuan, Xia, Pengguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176338/
https://www.ncbi.nlm.nih.gov/pubmed/35692644
http://dx.doi.org/10.1080/23802359.2022.2079106
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author Xu, Xinhan
Yao, Xuan
Zhang, Caijuan
Xia, Pengguo
author_facet Xu, Xinhan
Yao, Xuan
Zhang, Caijuan
Xia, Pengguo
author_sort Xu, Xinhan
collection PubMed
description Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The complete genome is 155,170 bp in length, including a large single-copy region (LSC) of 84,270 bp, a small single-copy region (SSC) of 17,918 bp and two copies of inverted repeat (IR) regions of 26,491 bp. The overall GC content of C. lyrata is 36.2%. The genome of C. lyrata contains 131 genes, including 85 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis suggested that the ten species in Cardamine were clustered together into a single branch within the Brassicaceae family and C. amariformis is at the base of the tree and C. lyrata and C. fallax are sister groups of the inner clade.
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spelling pubmed-91763382022-06-09 Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae) Xu, Xinhan Yao, Xuan Zhang, Caijuan Xia, Pengguo Mitochondrial DNA B Resour Plastome Announcement Cardamine lyrata Bunge 1833 grows near paddy fields, streams and shallow water. Its young stems and leaves can be eaten. It can also be used as medicine and has the effect of clearing away heat and dampness. The complete chloroplast genome sequence of the C. lyrata was determined and assembled. The complete genome is 155,170 bp in length, including a large single-copy region (LSC) of 84,270 bp, a small single-copy region (SSC) of 17,918 bp and two copies of inverted repeat (IR) regions of 26,491 bp. The overall GC content of C. lyrata is 36.2%. The genome of C. lyrata contains 131 genes, including 85 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis suggested that the ten species in Cardamine were clustered together into a single branch within the Brassicaceae family and C. amariformis is at the base of the tree and C. lyrata and C. fallax are sister groups of the inner clade. Taylor & Francis 2022-06-02 /pmc/articles/PMC9176338/ /pubmed/35692644 http://dx.doi.org/10.1080/23802359.2022.2079106 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Xu, Xinhan
Yao, Xuan
Zhang, Caijuan
Xia, Pengguo
Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title_full Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title_fullStr Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title_short Characterization of the complete chloroplast genome sequence of Cardamine lyrata Bunge(Brassicaceae)
title_sort characterization of the complete chloroplast genome sequence of cardamine lyrata bunge(brassicaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176338/
https://www.ncbi.nlm.nih.gov/pubmed/35692644
http://dx.doi.org/10.1080/23802359.2022.2079106
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