The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis

Clematis hexapetala Pall. (1776) is a traditional Chinese medicine belonging to the Ranunculaceae. In this study, the complete chloroplast genome was sequenced through Illumina platform, cp was circular DNA molecule of 159,538 bp in length with a typical quadripartite structure, consisting of four r...

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Autores principales: Cui, Yi, Sun, Yingxin, Ding, Yanzhe, Liu, Jing, Han, Zhongming, Wang, Yunhe, Han, Mei, Yang, Limin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176370/
https://www.ncbi.nlm.nih.gov/pubmed/35692648
http://dx.doi.org/10.1080/23802359.2022.2079101
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author Cui, Yi
Sun, Yingxin
Ding, Yanzhe
Liu, Jing
Han, Zhongming
Wang, Yunhe
Han, Mei
Yang, Limin
author_facet Cui, Yi
Sun, Yingxin
Ding, Yanzhe
Liu, Jing
Han, Zhongming
Wang, Yunhe
Han, Mei
Yang, Limin
author_sort Cui, Yi
collection PubMed
description Clematis hexapetala Pall. (1776) is a traditional Chinese medicine belonging to the Ranunculaceae. In this study, the complete chloroplast genome was sequenced through Illumina platform, cp was circular DNA molecule of 159,538 bp in length with a typical quadripartite structure, consisting of four regions: two copies of inverted repeat region (IRs: 31,039 bp), a large single-copy (LSC: 79,333 bp) region, a small single-copy (SSC: 18,127 bp) region. The chloroplast genome encodes a total of 135 genes, including 91 CDS genes, 36 tRNA genes, 8 rRNA genes. Phylogenetic analysis based on complete genes shows that C. hexapetala closely related to C. taeguensis in the genus Clematis. This study improves our comprehension of the chloroplast genome and its phylogenetic relationships within Ranunculaceae.
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spelling pubmed-91763702022-06-09 The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis Cui, Yi Sun, Yingxin Ding, Yanzhe Liu, Jing Han, Zhongming Wang, Yunhe Han, Mei Yang, Limin Mitochondrial DNA B Resour Mitogenome Announcement Clematis hexapetala Pall. (1776) is a traditional Chinese medicine belonging to the Ranunculaceae. In this study, the complete chloroplast genome was sequenced through Illumina platform, cp was circular DNA molecule of 159,538 bp in length with a typical quadripartite structure, consisting of four regions: two copies of inverted repeat region (IRs: 31,039 bp), a large single-copy (LSC: 79,333 bp) region, a small single-copy (SSC: 18,127 bp) region. The chloroplast genome encodes a total of 135 genes, including 91 CDS genes, 36 tRNA genes, 8 rRNA genes. Phylogenetic analysis based on complete genes shows that C. hexapetala closely related to C. taeguensis in the genus Clematis. This study improves our comprehension of the chloroplast genome and its phylogenetic relationships within Ranunculaceae. Taylor & Francis 2022-06-02 /pmc/articles/PMC9176370/ /pubmed/35692648 http://dx.doi.org/10.1080/23802359.2022.2079101 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cui, Yi
Sun, Yingxin
Ding, Yanzhe
Liu, Jing
Han, Zhongming
Wang, Yunhe
Han, Mei
Yang, Limin
The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title_full The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title_short The complete chloroplast genome of Clematis hexapetala (Ranunculaceae) and its phylogenetic analysis
title_sort complete chloroplast genome of clematis hexapetala (ranunculaceae) and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176370/
https://www.ncbi.nlm.nih.gov/pubmed/35692648
http://dx.doi.org/10.1080/23802359.2022.2079101
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