Cargando…
Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data
BACKGROUND: Biomedical researchers are strongly encouraged to make their research outputs more Findable, Accessible, Interoperable, and Reusable (FAIR). While many biomedical research outputs are more readily accessible through open data efforts, finding relevant outputs remains a significant challe...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176648/ https://www.ncbi.nlm.nih.gov/pubmed/35677074 http://dx.doi.org/10.1101/2021.09.02.458726 |
_version_ | 1784722709313224704 |
---|---|
author | Cano, Marco Tsueng, Ginger Zhou, Xinghua Hughes, Laura D. Mullen, Julia L. Xin, Jiwen Su, Andrew I. Wu, Chunlei |
author_facet | Cano, Marco Tsueng, Ginger Zhou, Xinghua Hughes, Laura D. Mullen, Julia L. Xin, Jiwen Su, Andrew I. Wu, Chunlei |
author_sort | Cano, Marco |
collection | PubMed |
description | BACKGROUND: Biomedical researchers are strongly encouraged to make their research outputs more Findable, Accessible, Interoperable, and Reusable (FAIR). While many biomedical research outputs are more readily accessible through open data efforts, finding relevant outputs remains a significant challenge. Schema.org is a metadata vocabulary standardization project that enables web content creators to make their content more FAIR. Leveraging schema.org could benefit biomedical research resource providers, but it can be challenging to apply schema.org standards to biomedical research outputs. We created an online browser-based tool that empowers researchers and repository developers to utilize schema.org or other biomedical schema projects. RESULTS: Our browser-based tool includes features which can help address many of the barriers towards schema.org-compliance such as: The ability to easily browse for relevant schema.org classes, the ability to extend and customize a class to be more suitable for biomedical research outputs, the ability to create data validation to ensure adherence of a research output to a customized class, and the ability to register a custom class to our schema registry enabling others to search and re-use it. We demonstrate the use of our tool with the creation of the Outbreak.info schema—a large multi-class schema for harmonizing various COVID-19 related resources. CONCLUSIONS: We have created a browser-based tool to empower biomedical research resource providers to leverage schema.org classes to make their research outputs more FAIR. |
format | Online Article Text |
id | pubmed-9176648 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-91766482022-06-09 Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data Cano, Marco Tsueng, Ginger Zhou, Xinghua Hughes, Laura D. Mullen, Julia L. Xin, Jiwen Su, Andrew I. Wu, Chunlei bioRxiv Article BACKGROUND: Biomedical researchers are strongly encouraged to make their research outputs more Findable, Accessible, Interoperable, and Reusable (FAIR). While many biomedical research outputs are more readily accessible through open data efforts, finding relevant outputs remains a significant challenge. Schema.org is a metadata vocabulary standardization project that enables web content creators to make their content more FAIR. Leveraging schema.org could benefit biomedical research resource providers, but it can be challenging to apply schema.org standards to biomedical research outputs. We created an online browser-based tool that empowers researchers and repository developers to utilize schema.org or other biomedical schema projects. RESULTS: Our browser-based tool includes features which can help address many of the barriers towards schema.org-compliance such as: The ability to easily browse for relevant schema.org classes, the ability to extend and customize a class to be more suitable for biomedical research outputs, the ability to create data validation to ensure adherence of a research output to a customized class, and the ability to register a custom class to our schema registry enabling others to search and re-use it. We demonstrate the use of our tool with the creation of the Outbreak.info schema—a large multi-class schema for harmonizing various COVID-19 related resources. CONCLUSIONS: We have created a browser-based tool to empower biomedical research resource providers to leverage schema.org classes to make their research outputs more FAIR. Cold Spring Harbor Laboratory 2022-06-02 /pmc/articles/PMC9176648/ /pubmed/35677074 http://dx.doi.org/10.1101/2021.09.02.458726 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Cano, Marco Tsueng, Ginger Zhou, Xinghua Hughes, Laura D. Mullen, Julia L. Xin, Jiwen Su, Andrew I. Wu, Chunlei Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title | Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title_full | Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title_fullStr | Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title_full_unstemmed | Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title_short | Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data |
title_sort | schema playground: a tool for authoring, extending, and using metadata schemas to improve fairness of biomedical data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9176648/ https://www.ncbi.nlm.nih.gov/pubmed/35677074 http://dx.doi.org/10.1101/2021.09.02.458726 |
work_keys_str_mv | AT canomarco schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT tsuengginger schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT zhouxinghua schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT hugheslaurad schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT mullenjulial schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT xinjiwen schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT suandrewi schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata AT wuchunlei schemaplaygroundatoolforauthoringextendingandusingmetadataschemastoimprovefairnessofbiomedicaldata |