Cargando…

RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data

Transcriptome sequencing (RNA-seq) is widely used to detect gene rearrangements and quantitate gene expression in acute lymphoblastic leukemia (ALL), but its utility and accuracy in identifying CNVs has not been well described. CNV information inferred from RNA-seq can be highly informative to guide...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bařinka, Jan, Hu, Zunsong, Wang, Lu, Wheeler, David A., Rahbarinia, Delaram, McLeod, Clay, Gu, Zhaohui, Mullighan, Charles G.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9177690/ https://www.ncbi.nlm.nih.gov/pubmed/35351983 http://dx.doi.org/10.1038/s41375-022-01547-8

Ejemplares similares

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data
por: Bellos, Evangelos, et al.
Publicado: (2014)

CNV-seq, a new method to detect copy number variation using high-throughput sequencing
por: Xie, Chao, et al.
Publicado: (2009)

cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data
por: Bellos, Evangelos, et al.
Publicado: (2014)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data
por: Chen, Yong, et al.
Publicado: (2017)

Digital microfluidics-based digital counting of single-cell copy number variation (dd-scCNV Seq)
por: Yu, Xiyuan, et al.
Publicado: (2023)

The Role of Number of Copies, Structure, Behavior and Copy Number Variations (CNV) of the Y Chromosome in Male Infertility
por: Signore, Fabrizio, et al.
Publicado: (2019)

X-CNV: genome-wide prediction of the pathogenicity of copy number variations
por: Zhang, Li, et al.
Publicado: (2021)

Copy Number Variation (CNV): A New Genomic Insight in Horses
por: Laseca, Nora, et al.
Publicado: (2022)

Genome-wide copy number variation (CNV) in patients with autoimmune Addison's disease
por: Brønstad, Ingeborg, et al.
Publicado: (2011)

ParseCNV integrative copy number variation association software with quality tracking
por: Glessner, Joseph T., et al.
Publicado: (2013)

cnvCurator: an interactive visualization and editing tool for somatic copy number variations
por: Ma, Lingnan, et al.
Publicado: (2015)

Copy number variation (CNV) identification, interpretation, and database from Brazilian patients
por: de Godoy, Victória Cabral Silveira Monteiro, et al.
Publicado: (2020)

dbCNV: deleteriousness-based model to predict pathogenicity of copy number variations
por: Lv, Kangqi, et al.
Publicado: (2023)

A novel scatterplot-based method to detect copy number variation (CNV)
por: Qiao, Jia-Lu, et al.
Publicado: (2023)

SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
por: Johnson, Nicholas, et al.
Publicado: (2015)

MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples
por: Malekpour, Seyed Amir, et al.
Publicado: (2018)

inCNV: An Integrated Analysis Tool for Copy Number Variation on Whole Exome Sequencing
por: Chanwigoon, Saowwapark, et al.
Publicado: (2020)

HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of Homozygosity
por: Zhou, Jinghang, et al.
Publicado: (2021)

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
por: Gai, Xiaowu, et al.
Publicado: (2010)

Technical considerations for genotyping multi-allelic copy number variation (CNV), in regions of segmental duplication
por: Cantsilieris, Stuart, et al.
Publicado: (2014)

Association Analysis to Copy Number Variation (CNV) of Opn4 Gene with Growth Traits of Goats
por: Li, LiJuan, et al.
Publicado: (2020)

CNV-P: a machine-learning framework for predicting high confident copy number variations
por: Wang, Taifu, et al.
Publicado: (2021)

CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data
por: Sinha, Rituparna, et al.
Publicado: (2015)

CNV-TV: A robust method to discover copy number variation from short sequencing reads
por: Duan, Junbo, et al.
Publicado: (2013)

A Common Copy Number Variation (CNV) Polymorphism in the CNTNAP4 Gene: Association with Aging in Females
por: Iakoubov, Leonid, et al.
Publicado: (2013)

Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data
por: Lavrichenko, Ksenia, et al.
Publicado: (2021)

CNV-PCC: An efficient method for detecting copy number variations from next-generation sequencing data
por: Zhang, Tong, et al.
Publicado: (2022)

ClassifyCNV: a tool for clinical annotation of copy-number variants
por: Gurbich, Tatiana A., et al.
Publicado: (2020)

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
por: Springer, Nathan M., et al.
Publicado: (2009)

Large scale copy number variation (CNV) at 14q12 is associated with the presence of genomic abnormalities in neoplasia
por: Braude, Ilan, et al.
Publicado: (2006)

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives
por: Zhao, Min, et al.
Publicado: (2013)

HBOS-CNV: A New Approach to Detect Copy Number Variations From Next-Generation Sequencing Data
por: Guo, Yang, et al.
Publicado: (2021)

CNV Radar: an improved method for somatic copy number alteration characterization in oncology
por: Soong, David, et al.
Publicado: (2020)

Variation in topoisomerase I gene copy number as a mechanism for intrinsic drug sensitivity.
por: McLeod, H. L., et al.
Publicado: (1996)

The utility of copy number variation (CNV) in studies of hypertension-related left ventricular hypertrophy (LVH): rationale, potential and challenges
por: BoonPeng, Hoh, et al.
Publicado: (2013)

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans
por: Haraksingh, Rajini R., et al.
Publicado: (2017)

EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data
por: Zhang, Zhongyang, et al.
Publicado: (2019)

CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online
por: Macnee, Marie, et al.
Publicado: (2023)

cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data
por: Bellos, Evangelos, et al.
Publicado: (2012)

DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data
por: Zhang, Yuanwei, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_tehuoknngg1849edeoblo7s94c