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Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach

BACKGROUND/AIMS: Previous artificial intelligence (AI) models attempting to segment gastric intestinal metaplasia (GIM) areas have failed to be deployed in real-time endoscopy due to their slow inference speeds. Here, we propose a new GIM segmentation AI model with inference speeds faster than 25 fr...

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Autores principales: Siripoppohn, Vitchaya, Pittayanon, Rapat, Tiankanon, Kasenee, Faknak, Natee, Sanpavat, Anapat, Klaikaew, Naruemon, Vateekul, Peerapon, Rerknimitr, Rungsun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Gastrointestinal Endoscopy 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9178134/
https://www.ncbi.nlm.nih.gov/pubmed/35534933
http://dx.doi.org/10.5946/ce.2022.005
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author Siripoppohn, Vitchaya
Pittayanon, Rapat
Tiankanon, Kasenee
Faknak, Natee
Sanpavat, Anapat
Klaikaew, Naruemon
Vateekul, Peerapon
Rerknimitr, Rungsun
author_facet Siripoppohn, Vitchaya
Pittayanon, Rapat
Tiankanon, Kasenee
Faknak, Natee
Sanpavat, Anapat
Klaikaew, Naruemon
Vateekul, Peerapon
Rerknimitr, Rungsun
author_sort Siripoppohn, Vitchaya
collection PubMed
description BACKGROUND/AIMS: Previous artificial intelligence (AI) models attempting to segment gastric intestinal metaplasia (GIM) areas have failed to be deployed in real-time endoscopy due to their slow inference speeds. Here, we propose a new GIM segmentation AI model with inference speeds faster than 25 frames per second that maintains a high level of accuracy. METHODS: Investigators from Chulalongkorn University obtained 802 histological-proven GIM images for AI model training. Four strategies were proposed to improve the model accuracy. First, transfer learning was employed to the public colon datasets. Second, an image preprocessing technique contrast-limited adaptive histogram equalization was employed to produce clearer GIM areas. Third, data augmentation was applied for a more robust model. Lastly, the bilateral segmentation network model was applied to segment GIM areas in real time. The results were analyzed using different validity values. RESULTS: From the internal test, our AI model achieved an inference speed of 31.53 frames per second. GIM detection showed sensitivity, specificity, positive predictive, negative predictive, accuracy, and mean intersection over union in GIM segmentation values of 93%, 80%, 82%, 92%, 87%, and 57%, respectively. CONCLUSIONS: The bilateral segmentation network combined with transfer learning, contrast-limited adaptive histogram equalization, and data augmentation can provide high sensitivity and good accuracy for GIM detection and segmentation.
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spelling pubmed-91781342022-06-14 Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach Siripoppohn, Vitchaya Pittayanon, Rapat Tiankanon, Kasenee Faknak, Natee Sanpavat, Anapat Klaikaew, Naruemon Vateekul, Peerapon Rerknimitr, Rungsun Clin Endosc Original Article BACKGROUND/AIMS: Previous artificial intelligence (AI) models attempting to segment gastric intestinal metaplasia (GIM) areas have failed to be deployed in real-time endoscopy due to their slow inference speeds. Here, we propose a new GIM segmentation AI model with inference speeds faster than 25 frames per second that maintains a high level of accuracy. METHODS: Investigators from Chulalongkorn University obtained 802 histological-proven GIM images for AI model training. Four strategies were proposed to improve the model accuracy. First, transfer learning was employed to the public colon datasets. Second, an image preprocessing technique contrast-limited adaptive histogram equalization was employed to produce clearer GIM areas. Third, data augmentation was applied for a more robust model. Lastly, the bilateral segmentation network model was applied to segment GIM areas in real time. The results were analyzed using different validity values. RESULTS: From the internal test, our AI model achieved an inference speed of 31.53 frames per second. GIM detection showed sensitivity, specificity, positive predictive, negative predictive, accuracy, and mean intersection over union in GIM segmentation values of 93%, 80%, 82%, 92%, 87%, and 57%, respectively. CONCLUSIONS: The bilateral segmentation network combined with transfer learning, contrast-limited adaptive histogram equalization, and data augmentation can provide high sensitivity and good accuracy for GIM detection and segmentation. Korean Society of Gastrointestinal Endoscopy 2022-05 2022-05-09 /pmc/articles/PMC9178134/ /pubmed/35534933 http://dx.doi.org/10.5946/ce.2022.005 Text en Copyright © 2022 Korean Society of Gastrointestinal Endoscopy https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Siripoppohn, Vitchaya
Pittayanon, Rapat
Tiankanon, Kasenee
Faknak, Natee
Sanpavat, Anapat
Klaikaew, Naruemon
Vateekul, Peerapon
Rerknimitr, Rungsun
Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title_full Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title_fullStr Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title_full_unstemmed Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title_short Real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
title_sort real-time semantic segmentation of gastric intestinal metaplasia using a deep learning approach
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9178134/
https://www.ncbi.nlm.nih.gov/pubmed/35534933
http://dx.doi.org/10.5946/ce.2022.005
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