Cargando…

Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein

[Image: see text] Parkinson’s disease is thought to be caused by aggregation of the intrinsically disordered protein, α-synuclein. Two amyloidogenic variants, A30P, and E46K familial mutants were investigated by wide-line (1)H NMR spectrometry as a completion of our earlier work on wild-type and A53...

Descripción completa

Detalles Bibliográficos
Autores principales: Bokor, Mónika, Házy, Eszter, Tantos, Ágnes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9178613/
https://www.ncbi.nlm.nih.gov/pubmed/35694516
http://dx.doi.org/10.1021/acsomega.2c00477
_version_ 1784723098404126720
author Bokor, Mónika
Házy, Eszter
Tantos, Ágnes
author_facet Bokor, Mónika
Házy, Eszter
Tantos, Ágnes
author_sort Bokor, Mónika
collection PubMed
description [Image: see text] Parkinson’s disease is thought to be caused by aggregation of the intrinsically disordered protein, α-synuclein. Two amyloidogenic variants, A30P, and E46K familial mutants were investigated by wide-line (1)H NMR spectrometry as a completion of our earlier work on wild-type and A53T α-synuclein ( M. Bokor et al. WT and A53T α-synuclein systems: melting diagram and its new interpretation. Int. J. Mol. Sci.2020, 21, 3997.). A monolayer of mobile water molecules hydrates A30P α-synuclein at the lowest potential barriers (temperatures), while E46K α-synuclein has here third as much mobile hydration, insufficient for functionality. According to wide-line (1)H NMR results and secondary structure predictions, E46K α-synuclein is more compact than the A30P variant and they are more compact than the wild type (WT) and A53T variants. Linear hydration vs potential barrier sections of A30P α-synuclein shows one and E46K shows two slopes. The different slopes of the latter between potential barriers E(a,1) and E(a,2) reflect a change in water–protein interactions. The 31–32% homogeneous potential barrier distribution of the protein–water bonds refers to a non-negligible amount of secondary structures in all four α-synuclein variants. The secondary structures detected by wide-line (1)H NMR are solvent-exposed α-helices, which are predicted by secondary structure models. β-sheets are only minor components of the protein structures as three- and eight-state predicted secondary structures are dominated by α-helices and coils.
format Online
Article
Text
id pubmed-9178613
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-91786132022-06-10 Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein Bokor, Mónika Házy, Eszter Tantos, Ágnes ACS Omega [Image: see text] Parkinson’s disease is thought to be caused by aggregation of the intrinsically disordered protein, α-synuclein. Two amyloidogenic variants, A30P, and E46K familial mutants were investigated by wide-line (1)H NMR spectrometry as a completion of our earlier work on wild-type and A53T α-synuclein ( M. Bokor et al. WT and A53T α-synuclein systems: melting diagram and its new interpretation. Int. J. Mol. Sci.2020, 21, 3997.). A monolayer of mobile water molecules hydrates A30P α-synuclein at the lowest potential barriers (temperatures), while E46K α-synuclein has here third as much mobile hydration, insufficient for functionality. According to wide-line (1)H NMR results and secondary structure predictions, E46K α-synuclein is more compact than the A30P variant and they are more compact than the wild type (WT) and A53T variants. Linear hydration vs potential barrier sections of A30P α-synuclein shows one and E46K shows two slopes. The different slopes of the latter between potential barriers E(a,1) and E(a,2) reflect a change in water–protein interactions. The 31–32% homogeneous potential barrier distribution of the protein–water bonds refers to a non-negligible amount of secondary structures in all four α-synuclein variants. The secondary structures detected by wide-line (1)H NMR are solvent-exposed α-helices, which are predicted by secondary structure models. β-sheets are only minor components of the protein structures as three- and eight-state predicted secondary structures are dominated by α-helices and coils. American Chemical Society 2022-05-23 /pmc/articles/PMC9178613/ /pubmed/35694516 http://dx.doi.org/10.1021/acsomega.2c00477 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Bokor, Mónika
Házy, Eszter
Tantos, Ágnes
Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title_full Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title_fullStr Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title_full_unstemmed Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title_short Wide-Line NMR Melting Diagrams, Their Thermodynamic Interpretation, and Secondary Structure Predictions for A30P and E46K α-Synuclein
title_sort wide-line nmr melting diagrams, their thermodynamic interpretation, and secondary structure predictions for a30p and e46k α-synuclein
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9178613/
https://www.ncbi.nlm.nih.gov/pubmed/35694516
http://dx.doi.org/10.1021/acsomega.2c00477
work_keys_str_mv AT bokormonika widelinenmrmeltingdiagramstheirthermodynamicinterpretationandsecondarystructurepredictionsfora30pande46kasynuclein
AT hazyeszter widelinenmrmeltingdiagramstheirthermodynamicinterpretationandsecondarystructurepredictionsfora30pande46kasynuclein
AT tantosagnes widelinenmrmeltingdiagramstheirthermodynamicinterpretationandsecondarystructurepredictionsfora30pande46kasynuclein