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Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning

SIMPLE SUMMARY: Training computer-assisted algorithms on medical images, particularly 18F-fluorodeoxyglucose (18F-FDG) positron emission tomography (PET) due to its excellent diagnostic accuracy, is difficult, considering small/fragmented samples or privacy concerns. In computer-vision, deep learnin...

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Autores principales: Abazari, Mohammad Amin, Soltani, Madjid, Moradi Kashkooli, Farshad, Raahemifar, Kaamran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9179454/
https://www.ncbi.nlm.nih.gov/pubmed/35681767
http://dx.doi.org/10.3390/cancers14112786
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author Abazari, Mohammad Amin
Soltani, Madjid
Moradi Kashkooli, Farshad
Raahemifar, Kaamran
author_facet Abazari, Mohammad Amin
Soltani, Madjid
Moradi Kashkooli, Farshad
Raahemifar, Kaamran
author_sort Abazari, Mohammad Amin
collection PubMed
description SIMPLE SUMMARY: Training computer-assisted algorithms on medical images, particularly 18F-fluorodeoxyglucose (18F-FDG) positron emission tomography (PET) due to its excellent diagnostic accuracy, is difficult, considering small/fragmented samples or privacy concerns. In computer-vision, deep learning-based models, unlike the conventional data augmentation methods, are highly sought after for creating massive medical samples. For this reason, we developed a multi-scale computational framework to generate synthetic 18F-FDG PET images similar to the real ones in different stages of solid tumor growth and angiogenesis. The framework is developed based on the bio-physiological phenomena of FDG radiotracer uptake in solid tumors using a biomathematical model and a generative adversarial network (GAN)-based architecture. The non-invasive augmented 18F-FDG PET images can be used in clinical practice without the need to manage the patient data. In addition, our spatiotemporal mathematical model can calculate the distribution of various radiopharmaceuticals in different tumor-associated vasculatures. ABSTRACT: No previous works have attempted to combine generative adversarial network (GAN) architectures and the biomathematical modeling of positron emission tomography (PET) radiotracer uptake in tumors to generate extra training samples. Here, we developed a novel computational model to produce synthetic 18F-fluorodeoxyglucose (18F-FDG) PET images of solid tumors in different stages of progression and angiogenesis. First, a comprehensive biomathematical model is employed for creating tumor-induced angiogenesis, intravascular and extravascular fluid flow, as well as modeling of the transport phenomena and reaction processes of 18F-FDG in a tumor microenvironment. Then, a deep convolutional GAN (DCGAN) model is employed for producing synthetic PET images using 170 input images of 18F-FDG uptake in each of 10 different tumor microvascular networks. The interstitial fluid parameters and spatiotemporal distribution of 18F-FDG uptake in tumor and healthy tissues have been compared against previously published numerical and experimental studies, indicating the accuracy of the model. The structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR) of the generated PET sample and the experimental one are 0.72 and 28.53, respectively. Our results demonstrate that a combination of biomathematical modeling and GAN-based augmentation models provides a robust framework for the non-invasive and accurate generation of synthetic PET images of solid tumors in different stages.
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spelling pubmed-91794542022-06-10 Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning Abazari, Mohammad Amin Soltani, Madjid Moradi Kashkooli, Farshad Raahemifar, Kaamran Cancers (Basel) Article SIMPLE SUMMARY: Training computer-assisted algorithms on medical images, particularly 18F-fluorodeoxyglucose (18F-FDG) positron emission tomography (PET) due to its excellent diagnostic accuracy, is difficult, considering small/fragmented samples or privacy concerns. In computer-vision, deep learning-based models, unlike the conventional data augmentation methods, are highly sought after for creating massive medical samples. For this reason, we developed a multi-scale computational framework to generate synthetic 18F-FDG PET images similar to the real ones in different stages of solid tumor growth and angiogenesis. The framework is developed based on the bio-physiological phenomena of FDG radiotracer uptake in solid tumors using a biomathematical model and a generative adversarial network (GAN)-based architecture. The non-invasive augmented 18F-FDG PET images can be used in clinical practice without the need to manage the patient data. In addition, our spatiotemporal mathematical model can calculate the distribution of various radiopharmaceuticals in different tumor-associated vasculatures. ABSTRACT: No previous works have attempted to combine generative adversarial network (GAN) architectures and the biomathematical modeling of positron emission tomography (PET) radiotracer uptake in tumors to generate extra training samples. Here, we developed a novel computational model to produce synthetic 18F-fluorodeoxyglucose (18F-FDG) PET images of solid tumors in different stages of progression and angiogenesis. First, a comprehensive biomathematical model is employed for creating tumor-induced angiogenesis, intravascular and extravascular fluid flow, as well as modeling of the transport phenomena and reaction processes of 18F-FDG in a tumor microenvironment. Then, a deep convolutional GAN (DCGAN) model is employed for producing synthetic PET images using 170 input images of 18F-FDG uptake in each of 10 different tumor microvascular networks. The interstitial fluid parameters and spatiotemporal distribution of 18F-FDG uptake in tumor and healthy tissues have been compared against previously published numerical and experimental studies, indicating the accuracy of the model. The structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR) of the generated PET sample and the experimental one are 0.72 and 28.53, respectively. Our results demonstrate that a combination of biomathematical modeling and GAN-based augmentation models provides a robust framework for the non-invasive and accurate generation of synthetic PET images of solid tumors in different stages. MDPI 2022-06-03 /pmc/articles/PMC9179454/ /pubmed/35681767 http://dx.doi.org/10.3390/cancers14112786 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Abazari, Mohammad Amin
Soltani, Madjid
Moradi Kashkooli, Farshad
Raahemifar, Kaamran
Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title_full Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title_fullStr Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title_full_unstemmed Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title_short Synthetic 18F-FDG PET Image Generation Using a Combination of Biomathematical Modeling and Machine Learning
title_sort synthetic 18f-fdg pet image generation using a combination of biomathematical modeling and machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9179454/
https://www.ncbi.nlm.nih.gov/pubmed/35681767
http://dx.doi.org/10.3390/cancers14112786
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