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An analysis of the accuracy of COVID-19 country transmission classification
Accurate epidemiological classification guidelines are essential to ensure implementation of adequate public health and social measures. Here, we investigate two frameworks, published in March 2020 and November 2020 by the World Health Organization (WHO) to categorise transmission risks of COVID-19...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186008/ https://www.ncbi.nlm.nih.gov/pubmed/35688930 http://dx.doi.org/10.1038/s41598-022-13494-6 |
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author | Deza-Cruz, I. Prada, J. M. Del Rio Vilas, V. |
author_facet | Deza-Cruz, I. Prada, J. M. Del Rio Vilas, V. |
author_sort | Deza-Cruz, I. |
collection | PubMed |
description | Accurate epidemiological classification guidelines are essential to ensure implementation of adequate public health and social measures. Here, we investigate two frameworks, published in March 2020 and November 2020 by the World Health Organization (WHO) to categorise transmission risks of COVID-19 infection, and assess how well the countries’ self-reported classification tracked their underlying epidemiological situation. We used three modelling approaches: an ordinal longitudinal model, a proportional odds model and a machine learning One-Rule classification algorithm. We applied these models to 202 countries’ daily transmission classification and epidemiological data, and study classification accuracy over time for the period April 2020 to June 2021, when WHO stopped publishing country classifications. Overall, the first published WHO classification, purely qualitative, lacked accuracy. The incidence rate within the previous 14 days was the best predictor with an average accuracy throughout the period of study of 61.5%. However, when each week was assessed independently, the models returned predictive accuracies above 50% only in the first weeks of April 2020. In contrast, the second classification, quantitative in nature, increased significantly the accuracy of transmission labels, with values as high as 94%. |
format | Online Article Text |
id | pubmed-9186008 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-91860082022-06-10 An analysis of the accuracy of COVID-19 country transmission classification Deza-Cruz, I. Prada, J. M. Del Rio Vilas, V. Sci Rep Article Accurate epidemiological classification guidelines are essential to ensure implementation of adequate public health and social measures. Here, we investigate two frameworks, published in March 2020 and November 2020 by the World Health Organization (WHO) to categorise transmission risks of COVID-19 infection, and assess how well the countries’ self-reported classification tracked their underlying epidemiological situation. We used three modelling approaches: an ordinal longitudinal model, a proportional odds model and a machine learning One-Rule classification algorithm. We applied these models to 202 countries’ daily transmission classification and epidemiological data, and study classification accuracy over time for the period April 2020 to June 2021, when WHO stopped publishing country classifications. Overall, the first published WHO classification, purely qualitative, lacked accuracy. The incidence rate within the previous 14 days was the best predictor with an average accuracy throughout the period of study of 61.5%. However, when each week was assessed independently, the models returned predictive accuracies above 50% only in the first weeks of April 2020. In contrast, the second classification, quantitative in nature, increased significantly the accuracy of transmission labels, with values as high as 94%. Nature Publishing Group UK 2022-06-10 /pmc/articles/PMC9186008/ /pubmed/35688930 http://dx.doi.org/10.1038/s41598-022-13494-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Deza-Cruz, I. Prada, J. M. Del Rio Vilas, V. An analysis of the accuracy of COVID-19 country transmission classification |
title | An analysis of the accuracy of COVID-19 country transmission classification |
title_full | An analysis of the accuracy of COVID-19 country transmission classification |
title_fullStr | An analysis of the accuracy of COVID-19 country transmission classification |
title_full_unstemmed | An analysis of the accuracy of COVID-19 country transmission classification |
title_short | An analysis of the accuracy of COVID-19 country transmission classification |
title_sort | analysis of the accuracy of covid-19 country transmission classification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186008/ https://www.ncbi.nlm.nih.gov/pubmed/35688930 http://dx.doi.org/10.1038/s41598-022-13494-6 |
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