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Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models

Landscape structure affects animal movement. Differences between landscapes may induce heterogeneity in home range size and movement rates among individuals within a population. These types of heterogeneity can cause bias when estimating population size or density and are seldom considered during an...

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Autores principales: Marrotte, Robby R., Howe, Eric J., Beauclerc, Kaela B., Potter, Derek, Northrup, Joseph M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186326/
https://www.ncbi.nlm.nih.gov/pubmed/35694380
http://dx.doi.org/10.7717/peerj.13490
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author Marrotte, Robby R.
Howe, Eric J.
Beauclerc, Kaela B.
Potter, Derek
Northrup, Joseph M.
author_facet Marrotte, Robby R.
Howe, Eric J.
Beauclerc, Kaela B.
Potter, Derek
Northrup, Joseph M.
author_sort Marrotte, Robby R.
collection PubMed
description Landscape structure affects animal movement. Differences between landscapes may induce heterogeneity in home range size and movement rates among individuals within a population. These types of heterogeneity can cause bias when estimating population size or density and are seldom considered during analyses. Individual heterogeneity, attributable to unknown or unobserved covariates, is often modelled using latent mixture distributions, but these are demanding of data, and abundance estimates are sensitive to the parameters of the mixture distribution. A recent extension of spatially explicit capture-recapture models allows landscape structure to be modelled explicitly by incorporating landscape connectivity using non-Euclidean least-cost paths, improving inference, especially in highly structured (riparian & mountainous) landscapes. Our objective was to investigate whether these novel models could improve inference about black bear (Ursus americanus) density. We fit spatially explicit capture-recapture models with standard and complex structures to black bear data from 51 separate study areas. We found that non-Euclidean models were supported in over half of our study areas. Associated density estimates were higher and less precise than those from simple models and only slightly more precise than those from finite mixture models. Estimates were sensitive to the scale (pixel resolution) at which least-cost paths were calculated, but there was no consistent pattern across covariates or resolutions. Our results indicate that negative bias associated with ignoring heterogeneity is potentially severe. However, the most popular method for dealing with this heterogeneity (finite mixtures) yielded potentially unreliable point estimates of abundance that may not be comparable across surveys, even in data sets with 136–350 total detections, 3–5 detections per individual, 97–283 recaptures, and 80–254 spatial recaptures. In these same study areas with high sample sizes, we expected that landscape features would not severely constrain animal movements and modelling non-Euclidian distance would not consistently improve inference. Our results suggest caution in applying non-Euclidean SCR models when there is no clear landscape covariate that is known to strongly influence the movement of the focal species, and in applying finite mixture models except when abundant data are available.
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spelling pubmed-91863262022-06-11 Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models Marrotte, Robby R. Howe, Eric J. Beauclerc, Kaela B. Potter, Derek Northrup, Joseph M. PeerJ Ecology Landscape structure affects animal movement. Differences between landscapes may induce heterogeneity in home range size and movement rates among individuals within a population. These types of heterogeneity can cause bias when estimating population size or density and are seldom considered during analyses. Individual heterogeneity, attributable to unknown or unobserved covariates, is often modelled using latent mixture distributions, but these are demanding of data, and abundance estimates are sensitive to the parameters of the mixture distribution. A recent extension of spatially explicit capture-recapture models allows landscape structure to be modelled explicitly by incorporating landscape connectivity using non-Euclidean least-cost paths, improving inference, especially in highly structured (riparian & mountainous) landscapes. Our objective was to investigate whether these novel models could improve inference about black bear (Ursus americanus) density. We fit spatially explicit capture-recapture models with standard and complex structures to black bear data from 51 separate study areas. We found that non-Euclidean models were supported in over half of our study areas. Associated density estimates were higher and less precise than those from simple models and only slightly more precise than those from finite mixture models. Estimates were sensitive to the scale (pixel resolution) at which least-cost paths were calculated, but there was no consistent pattern across covariates or resolutions. Our results indicate that negative bias associated with ignoring heterogeneity is potentially severe. However, the most popular method for dealing with this heterogeneity (finite mixtures) yielded potentially unreliable point estimates of abundance that may not be comparable across surveys, even in data sets with 136–350 total detections, 3–5 detections per individual, 97–283 recaptures, and 80–254 spatial recaptures. In these same study areas with high sample sizes, we expected that landscape features would not severely constrain animal movements and modelling non-Euclidian distance would not consistently improve inference. Our results suggest caution in applying non-Euclidean SCR models when there is no clear landscape covariate that is known to strongly influence the movement of the focal species, and in applying finite mixture models except when abundant data are available. PeerJ Inc. 2022-06-07 /pmc/articles/PMC9186326/ /pubmed/35694380 http://dx.doi.org/10.7717/peerj.13490 Text en ©2022 Marrotte et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Ecology
Marrotte, Robby R.
Howe, Eric J.
Beauclerc, Kaela B.
Potter, Derek
Northrup, Joseph M.
Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title_full Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title_fullStr Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title_full_unstemmed Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title_short Explaining detection heterogeneity with finite mixture and non-Euclidean movement in spatially explicit capture-recapture models
title_sort explaining detection heterogeneity with finite mixture and non-euclidean movement in spatially explicit capture-recapture models
topic Ecology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186326/
https://www.ncbi.nlm.nih.gov/pubmed/35694380
http://dx.doi.org/10.7717/peerj.13490
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