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The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length an...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186356/ https://www.ncbi.nlm.nih.gov/pubmed/35692653 http://dx.doi.org/10.1080/23802359.2022.2080595 |
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author | Liu, Enzhi Li, Junjian Ou, Siyang Dong, Bingjun Yang, Baotian Zhou, Yu |
author_facet | Liu, Enzhi Li, Junjian Ou, Siyang Dong, Bingjun Yang, Baotian Zhou, Yu |
author_sort | Liu, Enzhi |
collection | PubMed |
description | Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length and consisted of 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The S. atrata COX1 gene features a CGA start codon, and COX1, COX2, ND1, and ND5 exhibit incomplete stop codons that are presumed to be completed by the addition of 3’ A residues to the mRNA. The nucleotide composition was highly AT biased, accounting for 77.71% of the whole mitogenome. Phylogenetic analysis placed Semblis as sister to Eubasilissa. The complete mitochondrial genome will be helpful for further studies on the population genetics of this species and phylogenetic analyses of Trichoptera. |
format | Online Article Text |
id | pubmed-9186356 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-91863562022-06-11 The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) Liu, Enzhi Li, Junjian Ou, Siyang Dong, Bingjun Yang, Baotian Zhou, Yu Mitochondrial DNA B Resour Mitogenome Announcement Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length and consisted of 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The S. atrata COX1 gene features a CGA start codon, and COX1, COX2, ND1, and ND5 exhibit incomplete stop codons that are presumed to be completed by the addition of 3’ A residues to the mRNA. The nucleotide composition was highly AT biased, accounting for 77.71% of the whole mitogenome. Phylogenetic analysis placed Semblis as sister to Eubasilissa. The complete mitochondrial genome will be helpful for further studies on the population genetics of this species and phylogenetic analyses of Trichoptera. Taylor & Francis 2022-06-09 /pmc/articles/PMC9186356/ /pubmed/35692653 http://dx.doi.org/10.1080/23802359.2022.2080595 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Enzhi Li, Junjian Ou, Siyang Dong, Bingjun Yang, Baotian Zhou, Yu The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title | The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title_full | The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title_fullStr | The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title_full_unstemmed | The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title_short | The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) |
title_sort | complete mitochondrial genome of semblis atrata (trichoptera: phryganeidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186356/ https://www.ncbi.nlm.nih.gov/pubmed/35692653 http://dx.doi.org/10.1080/23802359.2022.2080595 |
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