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The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)

Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length an...

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Autores principales: Liu, Enzhi, Li, Junjian, Ou, Siyang, Dong, Bingjun, Yang, Baotian, Zhou, Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186356/
https://www.ncbi.nlm.nih.gov/pubmed/35692653
http://dx.doi.org/10.1080/23802359.2022.2080595
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author Liu, Enzhi
Li, Junjian
Ou, Siyang
Dong, Bingjun
Yang, Baotian
Zhou, Yu
author_facet Liu, Enzhi
Li, Junjian
Ou, Siyang
Dong, Bingjun
Yang, Baotian
Zhou, Yu
author_sort Liu, Enzhi
collection PubMed
description Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length and consisted of 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The S. atrata COX1 gene features a CGA start codon, and COX1, COX2, ND1, and ND5 exhibit incomplete stop codons that are presumed to be completed by the addition of 3’ A residues to the mRNA. The nucleotide composition was highly AT biased, accounting for 77.71% of the whole mitogenome. Phylogenetic analysis placed Semblis as sister to Eubasilissa. The complete mitochondrial genome will be helpful for further studies on the population genetics of this species and phylogenetic analyses of Trichoptera.
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spelling pubmed-91863562022-06-11 The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae) Liu, Enzhi Li, Junjian Ou, Siyang Dong, Bingjun Yang, Baotian Zhou, Yu Mitochondrial DNA B Resour Mitogenome Announcement Semblis atrata is one of three Semblis species distributed in clean brooks and streams in northern Eurasia. Genomic DNA of an S. atrata sample was extracted and sequenced for assembly and annotation of its complete mitogenome. The complete mitochondrial genome of S. atrata was 14,909 bp in length and consisted of 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The S. atrata COX1 gene features a CGA start codon, and COX1, COX2, ND1, and ND5 exhibit incomplete stop codons that are presumed to be completed by the addition of 3’ A residues to the mRNA. The nucleotide composition was highly AT biased, accounting for 77.71% of the whole mitogenome. Phylogenetic analysis placed Semblis as sister to Eubasilissa. The complete mitochondrial genome will be helpful for further studies on the population genetics of this species and phylogenetic analyses of Trichoptera. Taylor & Francis 2022-06-09 /pmc/articles/PMC9186356/ /pubmed/35692653 http://dx.doi.org/10.1080/23802359.2022.2080595 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Enzhi
Li, Junjian
Ou, Siyang
Dong, Bingjun
Yang, Baotian
Zhou, Yu
The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title_full The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title_fullStr The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title_full_unstemmed The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title_short The complete mitochondrial genome of Semblis atrata (Trichoptera: Phryganeidae)
title_sort complete mitochondrial genome of semblis atrata (trichoptera: phryganeidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9186356/
https://www.ncbi.nlm.nih.gov/pubmed/35692653
http://dx.doi.org/10.1080/23802359.2022.2080595
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