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Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50

Capsule endoscopy has been widely used as a non-invasive diagnostic tool for small or large intestinal lesions. In recent years, automated lesion detection systems using machine learning have been devised. This study aimed to develop an automated system for capsule endoscopic severity in patients wi...

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Autores principales: Higuchi, Naoki, Hiraga, Hiroto, Sasaki, Yoshihiro, Hiraga, Noriko, Igarashi, Shohei, Hasui, Keisuke, Ogasawara, Kohei, Maeda, Takato, Murai, Yasuhisa, Tatsuta, Tetsuya, Kikuchi, Hidezumi, Chinda, Daisuke, Mikami, Tatsuya, Matsuzaka, Masashi, Sakuraba, Hirotake, Fukuda, Shinsaku
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9187078/
https://www.ncbi.nlm.nih.gov/pubmed/35687553
http://dx.doi.org/10.1371/journal.pone.0269728
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author Higuchi, Naoki
Hiraga, Hiroto
Sasaki, Yoshihiro
Hiraga, Noriko
Igarashi, Shohei
Hasui, Keisuke
Ogasawara, Kohei
Maeda, Takato
Murai, Yasuhisa
Tatsuta, Tetsuya
Kikuchi, Hidezumi
Chinda, Daisuke
Mikami, Tatsuya
Matsuzaka, Masashi
Sakuraba, Hirotake
Fukuda, Shinsaku
author_facet Higuchi, Naoki
Hiraga, Hiroto
Sasaki, Yoshihiro
Hiraga, Noriko
Igarashi, Shohei
Hasui, Keisuke
Ogasawara, Kohei
Maeda, Takato
Murai, Yasuhisa
Tatsuta, Tetsuya
Kikuchi, Hidezumi
Chinda, Daisuke
Mikami, Tatsuya
Matsuzaka, Masashi
Sakuraba, Hirotake
Fukuda, Shinsaku
author_sort Higuchi, Naoki
collection PubMed
description Capsule endoscopy has been widely used as a non-invasive diagnostic tool for small or large intestinal lesions. In recent years, automated lesion detection systems using machine learning have been devised. This study aimed to develop an automated system for capsule endoscopic severity in patients with ulcerative colitis along the entire length of the colon using ResNet50. Capsule endoscopy videos from patients with ulcerative colitis were collected prospectively. Each single examination video file was partitioned into four segments: the cecum and ascending colon, transverse colon, descending and sigmoid colon, and rectum. Fifty still pictures (576 × 576 pixels) were extracted from each partitioned video. A patch (128 × 128 pixels) was trimmed from the still picture at every 32-pixel-strides. A total of 739,021 patch images were manually classified into six categories: 0) Mayo endoscopic subscore (MES) 0, 1) MES1, 2) MES2, 3) MES3, 4) inadequate quality for evaluation, and 5) ileal mucosa. ResNet50, a deep learning framework, was trained using 483,644 datasets and validated using 255,377 independent datasets. In total, 31 capsule endoscopy videos from 22 patients were collected. The accuracy rates of the training and validation datasets were 0.992 and 0.973, respectively. An automated evaluation system for the capsule endoscopic severity of ulcerative colitis was developed. This could be a useful tool for assessing topographic disease activity, thus decreasing the burden of image interpretation on endoscopists.
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spelling pubmed-91870782022-06-11 Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50 Higuchi, Naoki Hiraga, Hiroto Sasaki, Yoshihiro Hiraga, Noriko Igarashi, Shohei Hasui, Keisuke Ogasawara, Kohei Maeda, Takato Murai, Yasuhisa Tatsuta, Tetsuya Kikuchi, Hidezumi Chinda, Daisuke Mikami, Tatsuya Matsuzaka, Masashi Sakuraba, Hirotake Fukuda, Shinsaku PLoS One Research Article Capsule endoscopy has been widely used as a non-invasive diagnostic tool for small or large intestinal lesions. In recent years, automated lesion detection systems using machine learning have been devised. This study aimed to develop an automated system for capsule endoscopic severity in patients with ulcerative colitis along the entire length of the colon using ResNet50. Capsule endoscopy videos from patients with ulcerative colitis were collected prospectively. Each single examination video file was partitioned into four segments: the cecum and ascending colon, transverse colon, descending and sigmoid colon, and rectum. Fifty still pictures (576 × 576 pixels) were extracted from each partitioned video. A patch (128 × 128 pixels) was trimmed from the still picture at every 32-pixel-strides. A total of 739,021 patch images were manually classified into six categories: 0) Mayo endoscopic subscore (MES) 0, 1) MES1, 2) MES2, 3) MES3, 4) inadequate quality for evaluation, and 5) ileal mucosa. ResNet50, a deep learning framework, was trained using 483,644 datasets and validated using 255,377 independent datasets. In total, 31 capsule endoscopy videos from 22 patients were collected. The accuracy rates of the training and validation datasets were 0.992 and 0.973, respectively. An automated evaluation system for the capsule endoscopic severity of ulcerative colitis was developed. This could be a useful tool for assessing topographic disease activity, thus decreasing the burden of image interpretation on endoscopists. Public Library of Science 2022-06-10 /pmc/articles/PMC9187078/ /pubmed/35687553 http://dx.doi.org/10.1371/journal.pone.0269728 Text en © 2022 Higuchi et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Higuchi, Naoki
Hiraga, Hiroto
Sasaki, Yoshihiro
Hiraga, Noriko
Igarashi, Shohei
Hasui, Keisuke
Ogasawara, Kohei
Maeda, Takato
Murai, Yasuhisa
Tatsuta, Tetsuya
Kikuchi, Hidezumi
Chinda, Daisuke
Mikami, Tatsuya
Matsuzaka, Masashi
Sakuraba, Hirotake
Fukuda, Shinsaku
Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title_full Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title_fullStr Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title_full_unstemmed Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title_short Automated evaluation of colon capsule endoscopic severity of ulcerative colitis using ResNet50
title_sort automated evaluation of colon capsule endoscopic severity of ulcerative colitis using resnet50
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9187078/
https://www.ncbi.nlm.nih.gov/pubmed/35687553
http://dx.doi.org/10.1371/journal.pone.0269728
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