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Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings

The pathological identification of lymph node (LN) metastasis is demanding and tedious. Although convolutional neural networks (CNNs) possess considerable potential in improving the process, the ultrahigh-resolution of whole slide images hinders the development of a clinically applicable solution. W...

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Autores principales: Huang, Shih-Chiang, Chen, Chi-Chung, Lan, Jui, Hsieh, Tsan-Yu, Chuang, Huei-Chieh, Chien, Meng-Yao, Ou, Tao-Sheng, Chen, Kuang-Hua, Wu, Ren-Chin, Liu, Yu-Jen, Cheng, Chi-Tung, Huang, Yu-Jen, Tao, Liang-Wei, Hwu, An-Fong, Lin, I-Chieh, Hung, Shih-Hao, Yeh, Chao-Yuan, Chen, Tse-Ching
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9187676/
https://www.ncbi.nlm.nih.gov/pubmed/35688834
http://dx.doi.org/10.1038/s41467-022-30746-1
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author Huang, Shih-Chiang
Chen, Chi-Chung
Lan, Jui
Hsieh, Tsan-Yu
Chuang, Huei-Chieh
Chien, Meng-Yao
Ou, Tao-Sheng
Chen, Kuang-Hua
Wu, Ren-Chin
Liu, Yu-Jen
Cheng, Chi-Tung
Huang, Yu-Jen
Tao, Liang-Wei
Hwu, An-Fong
Lin, I-Chieh
Hung, Shih-Hao
Yeh, Chao-Yuan
Chen, Tse-Ching
author_facet Huang, Shih-Chiang
Chen, Chi-Chung
Lan, Jui
Hsieh, Tsan-Yu
Chuang, Huei-Chieh
Chien, Meng-Yao
Ou, Tao-Sheng
Chen, Kuang-Hua
Wu, Ren-Chin
Liu, Yu-Jen
Cheng, Chi-Tung
Huang, Yu-Jen
Tao, Liang-Wei
Hwu, An-Fong
Lin, I-Chieh
Hung, Shih-Hao
Yeh, Chao-Yuan
Chen, Tse-Ching
author_sort Huang, Shih-Chiang
collection PubMed
description The pathological identification of lymph node (LN) metastasis is demanding and tedious. Although convolutional neural networks (CNNs) possess considerable potential in improving the process, the ultrahigh-resolution of whole slide images hinders the development of a clinically applicable solution. We design an artificial-intelligence-assisted LN assessment workflow to facilitate the routine counting of metastatic LNs. Unlike previous patch-based approaches, our proposed method trains CNNs by using 5-gigapixel images, obviating the need for lesion-level annotations. Trained on 5907 LN images, our algorithm identifies metastatic LNs in gastric cancer with a slide-level area under the receiver operating characteristic curve (AUC) of 0.9936. Clinical experiments reveal that the workflow significantly improves the sensitivity of micrometastasis identification (81.94% to 95.83%, P < .001) and isolated tumor cells (67.95% to 96.15%, P < .001) in a significantly shorter review time (−31.5%, P < .001). Cross-site evaluation indicates that the algorithm is highly robust (AUC = 0.9829).
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spelling pubmed-91876762022-06-12 Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings Huang, Shih-Chiang Chen, Chi-Chung Lan, Jui Hsieh, Tsan-Yu Chuang, Huei-Chieh Chien, Meng-Yao Ou, Tao-Sheng Chen, Kuang-Hua Wu, Ren-Chin Liu, Yu-Jen Cheng, Chi-Tung Huang, Yu-Jen Tao, Liang-Wei Hwu, An-Fong Lin, I-Chieh Hung, Shih-Hao Yeh, Chao-Yuan Chen, Tse-Ching Nat Commun Article The pathological identification of lymph node (LN) metastasis is demanding and tedious. Although convolutional neural networks (CNNs) possess considerable potential in improving the process, the ultrahigh-resolution of whole slide images hinders the development of a clinically applicable solution. We design an artificial-intelligence-assisted LN assessment workflow to facilitate the routine counting of metastatic LNs. Unlike previous patch-based approaches, our proposed method trains CNNs by using 5-gigapixel images, obviating the need for lesion-level annotations. Trained on 5907 LN images, our algorithm identifies metastatic LNs in gastric cancer with a slide-level area under the receiver operating characteristic curve (AUC) of 0.9936. Clinical experiments reveal that the workflow significantly improves the sensitivity of micrometastasis identification (81.94% to 95.83%, P < .001) and isolated tumor cells (67.95% to 96.15%, P < .001) in a significantly shorter review time (−31.5%, P < .001). Cross-site evaluation indicates that the algorithm is highly robust (AUC = 0.9829). Nature Publishing Group UK 2022-06-10 /pmc/articles/PMC9187676/ /pubmed/35688834 http://dx.doi.org/10.1038/s41467-022-30746-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Huang, Shih-Chiang
Chen, Chi-Chung
Lan, Jui
Hsieh, Tsan-Yu
Chuang, Huei-Chieh
Chien, Meng-Yao
Ou, Tao-Sheng
Chen, Kuang-Hua
Wu, Ren-Chin
Liu, Yu-Jen
Cheng, Chi-Tung
Huang, Yu-Jen
Tao, Liang-Wei
Hwu, An-Fong
Lin, I-Chieh
Hung, Shih-Hao
Yeh, Chao-Yuan
Chen, Tse-Ching
Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title_full Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title_fullStr Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title_full_unstemmed Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title_short Deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
title_sort deep neural network trained on gigapixel images improves lymph node metastasis detection in clinical settings
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9187676/
https://www.ncbi.nlm.nih.gov/pubmed/35688834
http://dx.doi.org/10.1038/s41467-022-30746-1
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