Cargando…

Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors

We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-on...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Zhi-Wen, del Cueto, Marcos, Troisi, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: RSC 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9189862/
https://www.ncbi.nlm.nih.gov/pubmed/35769202
http://dx.doi.org/10.1039/d2dd00004k
_version_ 1784725680651501568
author Zhao, Zhi-Wen
del Cueto, Marcos
Troisi, Alessandro
author_facet Zhao, Zhi-Wen
del Cueto, Marcos
Troisi, Alessandro
author_sort Zhao, Zhi-Wen
collection PubMed
description We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-one-group-out cross-validation, in which the ML model is trained to explicitly perform extrapolations of unseen chemical families. This approach can be used across materials science and chemistry problems to improve the added value of ML predictions, instead of using extrapolative ML models that were trained with a regular cross-validation. We consider as a case study the problem of the discovery of non-fullerene acceptors because novel classes of acceptors are naturally classified into distinct chemical families. We show that conventional ML methods are not useful in practice when attempting to predict the efficiency of a completely novel class of materials. The approach proposed in this work increases the accuracy of the predictions to enable at least the categorization of materials with a performance above and below the median value.
format Online
Article
Text
id pubmed-9189862
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher RSC
record_format MEDLINE/PubMed
spelling pubmed-91898622022-06-27 Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors Zhao, Zhi-Wen del Cueto, Marcos Troisi, Alessandro Digit Discov Chemistry We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-one-group-out cross-validation, in which the ML model is trained to explicitly perform extrapolations of unseen chemical families. This approach can be used across materials science and chemistry problems to improve the added value of ML predictions, instead of using extrapolative ML models that were trained with a regular cross-validation. We consider as a case study the problem of the discovery of non-fullerene acceptors because novel classes of acceptors are naturally classified into distinct chemical families. We show that conventional ML methods are not useful in practice when attempting to predict the efficiency of a completely novel class of materials. The approach proposed in this work increases the accuracy of the predictions to enable at least the categorization of materials with a performance above and below the median value. RSC 2022-03-25 /pmc/articles/PMC9189862/ /pubmed/35769202 http://dx.doi.org/10.1039/d2dd00004k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Zhao, Zhi-Wen
del Cueto, Marcos
Troisi, Alessandro
Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title_full Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title_fullStr Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title_full_unstemmed Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title_short Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
title_sort limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9189862/
https://www.ncbi.nlm.nih.gov/pubmed/35769202
http://dx.doi.org/10.1039/d2dd00004k
work_keys_str_mv AT zhaozhiwen limitationsofmachinelearningmodelswhenpredictingcompoundswithcompletelynewchemistriespossibleimprovementsappliedtothediscoveryofnewnonfullereneacceptors
AT delcuetomarcos limitationsofmachinelearningmodelswhenpredictingcompoundswithcompletelynewchemistriespossibleimprovementsappliedtothediscoveryofnewnonfullereneacceptors
AT troisialessandro limitationsofmachinelearningmodelswhenpredictingcompoundswithcompletelynewchemistriespossibleimprovementsappliedtothediscoveryofnewnonfullereneacceptors