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Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors
We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-on...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
RSC
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9189862/ https://www.ncbi.nlm.nih.gov/pubmed/35769202 http://dx.doi.org/10.1039/d2dd00004k |
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author | Zhao, Zhi-Wen del Cueto, Marcos Troisi, Alessandro |
author_facet | Zhao, Zhi-Wen del Cueto, Marcos Troisi, Alessandro |
author_sort | Zhao, Zhi-Wen |
collection | PubMed |
description | We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-one-group-out cross-validation, in which the ML model is trained to explicitly perform extrapolations of unseen chemical families. This approach can be used across materials science and chemistry problems to improve the added value of ML predictions, instead of using extrapolative ML models that were trained with a regular cross-validation. We consider as a case study the problem of the discovery of non-fullerene acceptors because novel classes of acceptors are naturally classified into distinct chemical families. We show that conventional ML methods are not useful in practice when attempting to predict the efficiency of a completely novel class of materials. The approach proposed in this work increases the accuracy of the predictions to enable at least the categorization of materials with a performance above and below the median value. |
format | Online Article Text |
id | pubmed-9189862 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | RSC |
record_format | MEDLINE/PubMed |
spelling | pubmed-91898622022-06-27 Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors Zhao, Zhi-Wen del Cueto, Marcos Troisi, Alessandro Digit Discov Chemistry We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-one-group-out cross-validation, in which the ML model is trained to explicitly perform extrapolations of unseen chemical families. This approach can be used across materials science and chemistry problems to improve the added value of ML predictions, instead of using extrapolative ML models that were trained with a regular cross-validation. We consider as a case study the problem of the discovery of non-fullerene acceptors because novel classes of acceptors are naturally classified into distinct chemical families. We show that conventional ML methods are not useful in practice when attempting to predict the efficiency of a completely novel class of materials. The approach proposed in this work increases the accuracy of the predictions to enable at least the categorization of materials with a performance above and below the median value. RSC 2022-03-25 /pmc/articles/PMC9189862/ /pubmed/35769202 http://dx.doi.org/10.1039/d2dd00004k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Zhao, Zhi-Wen del Cueto, Marcos Troisi, Alessandro Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title | Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title_full | Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title_fullStr | Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title_full_unstemmed | Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title_short | Limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
title_sort | limitations of machine learning models when predicting compounds with completely new chemistries: possible improvements applied to the discovery of new non-fullerene acceptors |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9189862/ https://www.ncbi.nlm.nih.gov/pubmed/35769202 http://dx.doi.org/10.1039/d2dd00004k |
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