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The complete genome sequence of elite bread wheat cultivar, “Sonmez”
High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors. The bread wheat cultivar Sonmez-2001 is a registered variety that is notable for its performance under low-irrigation conditions, which furt...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9194515/ https://www.ncbi.nlm.nih.gov/pubmed/35721598 http://dx.doi.org/10.12688/f1000research.121637.1 |
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author | Akpinar, Bala Ani Leroy, Philippe Watson-Haigh, Nathan Baumann, Ute Barbe, Valerie Budak, Hikmet |
author_facet | Akpinar, Bala Ani Leroy, Philippe Watson-Haigh, Nathan Baumann, Ute Barbe, Valerie Budak, Hikmet |
author_sort | Akpinar, Bala Ani |
collection | PubMed |
description | High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors. The bread wheat cultivar Sonmez-2001 is a registered variety that is notable for its performance under low-irrigation conditions, which further improves upon irrigation. Additionally, Sonmez-2001 is resilient against certain biotic stressors, particularly soil-borne pathogens. Here, we provide a reference-guided whole genome sequence of Sonmez-2001, assembled into 21 chromosomes of the A, B and D genomes and totaling 13.3 gigabase-pairs in length. Additionally, a de novo assembly of an additional 1.05 gigabase-pairs was generated that represents either Sonmez-specific sequences or sequences that considerably diverged between Sonmez and Chinese Spring. Within this de novo assembly, we identified 35 gene models, of which 11 were high-confidence, that may contribute to the favorable traits of this high-performing variety. We identified up to 24 million sequence variants, of which up to 2.4% reside in coding sequences, that can be used to develop molecular markers that should be of immediate use to the cereal community. |
format | Online Article Text |
id | pubmed-9194515 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-91945152022-06-16 The complete genome sequence of elite bread wheat cultivar, “Sonmez” Akpinar, Bala Ani Leroy, Philippe Watson-Haigh, Nathan Baumann, Ute Barbe, Valerie Budak, Hikmet F1000Res Genome Note High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors. The bread wheat cultivar Sonmez-2001 is a registered variety that is notable for its performance under low-irrigation conditions, which further improves upon irrigation. Additionally, Sonmez-2001 is resilient against certain biotic stressors, particularly soil-borne pathogens. Here, we provide a reference-guided whole genome sequence of Sonmez-2001, assembled into 21 chromosomes of the A, B and D genomes and totaling 13.3 gigabase-pairs in length. Additionally, a de novo assembly of an additional 1.05 gigabase-pairs was generated that represents either Sonmez-specific sequences or sequences that considerably diverged between Sonmez and Chinese Spring. Within this de novo assembly, we identified 35 gene models, of which 11 were high-confidence, that may contribute to the favorable traits of this high-performing variety. We identified up to 24 million sequence variants, of which up to 2.4% reside in coding sequences, that can be used to develop molecular markers that should be of immediate use to the cereal community. F1000 Research Limited 2022-06-06 /pmc/articles/PMC9194515/ /pubmed/35721598 http://dx.doi.org/10.12688/f1000research.121637.1 Text en Copyright: © 2022 Akpinar BA et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Note Akpinar, Bala Ani Leroy, Philippe Watson-Haigh, Nathan Baumann, Ute Barbe, Valerie Budak, Hikmet The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title | The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title_full | The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title_fullStr | The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title_full_unstemmed | The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title_short | The complete genome sequence of elite bread wheat cultivar, “Sonmez” |
title_sort | complete genome sequence of elite bread wheat cultivar, “sonmez” |
topic | Genome Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9194515/ https://www.ncbi.nlm.nih.gov/pubmed/35721598 http://dx.doi.org/10.12688/f1000research.121637.1 |
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