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A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data

In recent years, the use of convolutional neural networks (CNNs) for raw resting-state electroencephalography (EEG) analysis has grown increasingly common. However, relative to earlier machine learning and deep learning methods with manually extracted features, CNNs for raw EEG analysis present uniq...

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Autores principales: Ellis, Charles A., Miller, Robyn L., Calhoun, Vince D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9194525/
https://www.ncbi.nlm.nih.gov/pubmed/35712676
http://dx.doi.org/10.3389/fninf.2022.872035
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author Ellis, Charles A.
Miller, Robyn L.
Calhoun, Vince D.
author_facet Ellis, Charles A.
Miller, Robyn L.
Calhoun, Vince D.
author_sort Ellis, Charles A.
collection PubMed
description In recent years, the use of convolutional neural networks (CNNs) for raw resting-state electroencephalography (EEG) analysis has grown increasingly common. However, relative to earlier machine learning and deep learning methods with manually extracted features, CNNs for raw EEG analysis present unique problems for explainability. As such, a growing group of methods have been developed that provide insight into the spectral features learned by CNNs. However, spectral power is not the only important form of information within EEG, and the capacity to understand the roles of specific multispectral waveforms identified by CNNs could be very helpful. In this study, we present a novel model visualization-based approach that adapts the traditional CNN architecture to increase interpretability and combines that inherent interpretability with a systematic evaluation of the model via a series of novel explainability methods. Our approach evaluates the importance of spectrally distinct first-layer clusters of filters before examining the contributions of identified waveforms and spectra to cluster importance. We evaluate our approach within the context of automated sleep stage classification and find that, for the most part, our explainability results are highly consistent with clinical guidelines. Our approach is the first to systematically evaluate both waveform and spectral feature importance in CNNs trained on resting-state EEG data.
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spelling pubmed-91945252022-06-15 A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data Ellis, Charles A. Miller, Robyn L. Calhoun, Vince D. Front Neuroinform Neuroinformatics In recent years, the use of convolutional neural networks (CNNs) for raw resting-state electroencephalography (EEG) analysis has grown increasingly common. However, relative to earlier machine learning and deep learning methods with manually extracted features, CNNs for raw EEG analysis present unique problems for explainability. As such, a growing group of methods have been developed that provide insight into the spectral features learned by CNNs. However, spectral power is not the only important form of information within EEG, and the capacity to understand the roles of specific multispectral waveforms identified by CNNs could be very helpful. In this study, we present a novel model visualization-based approach that adapts the traditional CNN architecture to increase interpretability and combines that inherent interpretability with a systematic evaluation of the model via a series of novel explainability methods. Our approach evaluates the importance of spectrally distinct first-layer clusters of filters before examining the contributions of identified waveforms and spectra to cluster importance. We evaluate our approach within the context of automated sleep stage classification and find that, for the most part, our explainability results are highly consistent with clinical guidelines. Our approach is the first to systematically evaluate both waveform and spectral feature importance in CNNs trained on resting-state EEG data. Frontiers Media S.A. 2022-05-31 /pmc/articles/PMC9194525/ /pubmed/35712676 http://dx.doi.org/10.3389/fninf.2022.872035 Text en Copyright © 2022 Ellis, Miller and Calhoun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroinformatics
Ellis, Charles A.
Miller, Robyn L.
Calhoun, Vince D.
A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title_full A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title_fullStr A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title_full_unstemmed A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title_short A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data
title_sort systematic approach for explaining time and frequency features extracted by convolutional neural networks from raw electroencephalography data
topic Neuroinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9194525/
https://www.ncbi.nlm.nih.gov/pubmed/35712676
http://dx.doi.org/10.3389/fninf.2022.872035
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