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Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender

BACKGROUND: Coronavirus disease 2019 (COVID19) caused by the new severe acute respiratory syndrome coronavirus 2 (SARSCoV2) is a global public health emergency. Age and gender are two important factors related to the risk and outcome of various diseases. Cycle threshold (Ct) value is believed to hav...

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Autores principales: Ur Rehman, Mati, Sajjad Naqvi, Syed, Ullah, Rooh, Arshad, Narmeen, Ammad, Muhammad, Ul Ain, Qurat, Razzak, Anam, Yousaf, Muhammad, Hussain, Arif, Hasan, Tarique N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9195597/
https://www.ncbi.nlm.nih.gov/pubmed/35714938
http://dx.doi.org/10.1016/j.cca.2022.06.008
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author Ur Rehman, Mati
Sajjad Naqvi, Syed
Ullah, Rooh
Arshad, Narmeen
Ammad, Muhammad
Ul Ain, Qurat
Razzak, Anam
Yousaf, Muhammad
Hussain, Arif
Hasan, Tarique N.
author_facet Ur Rehman, Mati
Sajjad Naqvi, Syed
Ullah, Rooh
Arshad, Narmeen
Ammad, Muhammad
Ul Ain, Qurat
Razzak, Anam
Yousaf, Muhammad
Hussain, Arif
Hasan, Tarique N.
author_sort Ur Rehman, Mati
collection PubMed
description BACKGROUND: Coronavirus disease 2019 (COVID19) caused by the new severe acute respiratory syndrome coronavirus 2 (SARSCoV2) is a global public health emergency. Age and gender are two important factors related to the risk and outcome of various diseases. Cycle threshold (Ct) value is believed to have relation with age and gender. OBJECTIVE: This study has been conducted to investigates the association between SARS-CoV-2 cycle threshold to age and gender of COVID-19 patients, to investigate whether the population-wide change of SARSCoV2 RTPCR Ct value over time is corelated to the number of new COVID19 cases and to investigate the dynamic of RdRp and N genes. METHODS: 72,811 individuals from second wave of COVID19, were observed in current study at Pure Health Lab, Mafraq Hospital, Abu Dhabi, UAE. RESULTS: 15,201/72,811 (21 %) positivity was observed. COVID-19 were more prevalent in males (59.35%) as compared to female (40.65%). The Positivity rate were significantly higher in Male than in Female cases (p-Value = 0.04). The Ct values for both targets of all the samples were ranged from 4.57 to 29.73. Longitudinal analysis showed significant increased during the study period from starting to end as were hypothesized. Interestingly, both the targets (RdRp and N) were present in age < 1 year. Which may indicate that mutated strains are not prevalent in children’s < 1 year. CONCLUSION: There was no statistically significant difference in viral loads in between age-groups. Males were tending to higher viral load compared to females. The findings have implications for preventive strategies.
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spelling pubmed-91955972022-06-14 Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender Ur Rehman, Mati Sajjad Naqvi, Syed Ullah, Rooh Arshad, Narmeen Ammad, Muhammad Ul Ain, Qurat Razzak, Anam Yousaf, Muhammad Hussain, Arif Hasan, Tarique N. Clin Chim Acta Article BACKGROUND: Coronavirus disease 2019 (COVID19) caused by the new severe acute respiratory syndrome coronavirus 2 (SARSCoV2) is a global public health emergency. Age and gender are two important factors related to the risk and outcome of various diseases. Cycle threshold (Ct) value is believed to have relation with age and gender. OBJECTIVE: This study has been conducted to investigates the association between SARS-CoV-2 cycle threshold to age and gender of COVID-19 patients, to investigate whether the population-wide change of SARSCoV2 RTPCR Ct value over time is corelated to the number of new COVID19 cases and to investigate the dynamic of RdRp and N genes. METHODS: 72,811 individuals from second wave of COVID19, were observed in current study at Pure Health Lab, Mafraq Hospital, Abu Dhabi, UAE. RESULTS: 15,201/72,811 (21 %) positivity was observed. COVID-19 were more prevalent in males (59.35%) as compared to female (40.65%). The Positivity rate were significantly higher in Male than in Female cases (p-Value = 0.04). The Ct values for both targets of all the samples were ranged from 4.57 to 29.73. Longitudinal analysis showed significant increased during the study period from starting to end as were hypothesized. Interestingly, both the targets (RdRp and N) were present in age < 1 year. Which may indicate that mutated strains are not prevalent in children’s < 1 year. CONCLUSION: There was no statistically significant difference in viral loads in between age-groups. Males were tending to higher viral load compared to females. The findings have implications for preventive strategies. Elsevier B.V. 2022-08-01 2022-06-14 /pmc/articles/PMC9195597/ /pubmed/35714938 http://dx.doi.org/10.1016/j.cca.2022.06.008 Text en © 2022 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Ur Rehman, Mati
Sajjad Naqvi, Syed
Ullah, Rooh
Arshad, Narmeen
Ammad, Muhammad
Ul Ain, Qurat
Razzak, Anam
Yousaf, Muhammad
Hussain, Arif
Hasan, Tarique N.
Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title_full Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title_fullStr Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title_full_unstemmed Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title_short Elucidation of correlation between SARS-CoV-2 RdRp and N gene cycle threshold (Ct) by RT-PCR with age and gender
title_sort elucidation of correlation between sars-cov-2 rdrp and n gene cycle threshold (ct) by rt-pcr with age and gender
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9195597/
https://www.ncbi.nlm.nih.gov/pubmed/35714938
http://dx.doi.org/10.1016/j.cca.2022.06.008
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