Cargando…

Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses

Strigolactones (SLs) are a novel class of plant hormones that play critical roles in regulating various developmental processes and stress tolerance. Although the SL biosynthetic and signaling genes were already determined in some plants such as Arabidopsis and rice, the information of SL-related ge...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Yanyan, Xu, Jinghao, Wang, Chuanyin, Pang, Yunning, Li, Lijian, Tang, Xinjie, Li, Bo, Sun, Qinghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9196262/
https://www.ncbi.nlm.nih.gov/pubmed/35712547
http://dx.doi.org/10.7717/peerj.13551
_version_ 1784727146387734528
author Yu, Yanyan
Xu, Jinghao
Wang, Chuanyin
Pang, Yunning
Li, Lijian
Tang, Xinjie
Li, Bo
Sun, Qinghua
author_facet Yu, Yanyan
Xu, Jinghao
Wang, Chuanyin
Pang, Yunning
Li, Lijian
Tang, Xinjie
Li, Bo
Sun, Qinghua
author_sort Yu, Yanyan
collection PubMed
description Strigolactones (SLs) are a novel class of plant hormones that play critical roles in regulating various developmental processes and stress tolerance. Although the SL biosynthetic and signaling genes were already determined in some plants such as Arabidopsis and rice, the information of SL-related genes in grapevine (Vitis vinifera L.) remains largely unknown. In this study, the SL-related genes were identified from the whole grapevine genome, and their expression patterns under salt and drought stresses were determined. The results indicated that the five genes that involved in the SL biosynthesis included one each of the D27, CCD7, CCD8, MAX1 and LBO genes, as well as the three genes that involved in the SL signaling included one each of the D14, MAX2, D53 genes. Phylogenetic analysis suggested that these SL-related proteins are highly conserved among different plant species. Promoter analysis showed that the prevalence of a variety of cis-acting elements associated with hormones and abiotic stress existed in the promoter regions of these SL-related genes. Furthermore, the transcription expression analysis demonstrated that most SL-related genes are involved in the salt and drought stresses response in grapevine. These findings provided valuable information for further investigation and functional analysis of SL biosynthetic and signaling genes in response to salt and drought stresses in grapevine.
format Online
Article
Text
id pubmed-9196262
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-91962622022-06-15 Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses Yu, Yanyan Xu, Jinghao Wang, Chuanyin Pang, Yunning Li, Lijian Tang, Xinjie Li, Bo Sun, Qinghua PeerJ Agricultural Science Strigolactones (SLs) are a novel class of plant hormones that play critical roles in regulating various developmental processes and stress tolerance. Although the SL biosynthetic and signaling genes were already determined in some plants such as Arabidopsis and rice, the information of SL-related genes in grapevine (Vitis vinifera L.) remains largely unknown. In this study, the SL-related genes were identified from the whole grapevine genome, and their expression patterns under salt and drought stresses were determined. The results indicated that the five genes that involved in the SL biosynthesis included one each of the D27, CCD7, CCD8, MAX1 and LBO genes, as well as the three genes that involved in the SL signaling included one each of the D14, MAX2, D53 genes. Phylogenetic analysis suggested that these SL-related proteins are highly conserved among different plant species. Promoter analysis showed that the prevalence of a variety of cis-acting elements associated with hormones and abiotic stress existed in the promoter regions of these SL-related genes. Furthermore, the transcription expression analysis demonstrated that most SL-related genes are involved in the salt and drought stresses response in grapevine. These findings provided valuable information for further investigation and functional analysis of SL biosynthetic and signaling genes in response to salt and drought stresses in grapevine. PeerJ Inc. 2022-06-10 /pmc/articles/PMC9196262/ /pubmed/35712547 http://dx.doi.org/10.7717/peerj.13551 Text en © 2022 Yu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Agricultural Science
Yu, Yanyan
Xu, Jinghao
Wang, Chuanyin
Pang, Yunning
Li, Lijian
Tang, Xinjie
Li, Bo
Sun, Qinghua
Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title_full Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title_fullStr Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title_full_unstemmed Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title_short Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
title_sort genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
topic Agricultural Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9196262/
https://www.ncbi.nlm.nih.gov/pubmed/35712547
http://dx.doi.org/10.7717/peerj.13551
work_keys_str_mv AT yuyanyan genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT xujinghao genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT wangchuanyin genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT pangyunning genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT lilijian genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT tangxinjie genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT libo genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses
AT sunqinghua genomewideanalysisofthestrigolactonebiosyntheticandsignalinggenesingrapevineandtheirresponsetosaltanddroughtstresses