The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)

Habenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeat...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jin, Yang, Yishan, Tang, Jianmin, Luo, Yajin, Lv, Huqiang, Chai, Shengfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9196706/
https://www.ncbi.nlm.nih.gov/pubmed/35712546
http://dx.doi.org/10.1080/23802359.2022.2080016
_version_ 1784727250383405056
author Zhang, Jin
Yang, Yishan
Tang, Jianmin
Luo, Yajin
Lv, Huqiang
Chai, Shengfeng
author_facet Zhang, Jin
Yang, Yishan
Tang, Jianmin
Luo, Yajin
Lv, Huqiang
Chai, Shengfeng
author_sort Zhang, Jin
collection PubMed
description Habenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeats (IRs) regions of 26,339 bp each, a large single-copy (LSC) region of 83,963 bp and a small single-copy (SSC) region of 17,041 bp. The cp genome encoded 133 genes, including 87 protein-coding genes (PCG), eight rRNA genes, and 38 tRNA genes. The maximum-likelihood phylogenetic analysis based on 12 cp genomes showed that H. dentata was sister to Habenaria chejuensis and Habenaria ciliolaris. This work will be valuable for genetic and phylogenetic studies on H. dentata.
format Online
Article
Text
id pubmed-9196706
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-91967062022-06-15 The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) Zhang, Jin Yang, Yishan Tang, Jianmin Luo, Yajin Lv, Huqiang Chai, Shengfeng Mitochondrial DNA B Resour Plastome Announcement Habenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeats (IRs) regions of 26,339 bp each, a large single-copy (LSC) region of 83,963 bp and a small single-copy (SSC) region of 17,041 bp. The cp genome encoded 133 genes, including 87 protein-coding genes (PCG), eight rRNA genes, and 38 tRNA genes. The maximum-likelihood phylogenetic analysis based on 12 cp genomes showed that H. dentata was sister to Habenaria chejuensis and Habenaria ciliolaris. This work will be valuable for genetic and phylogenetic studies on H. dentata. Taylor & Francis 2022-06-10 /pmc/articles/PMC9196706/ /pubmed/35712546 http://dx.doi.org/10.1080/23802359.2022.2080016 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Zhang, Jin
Yang, Yishan
Tang, Jianmin
Luo, Yajin
Lv, Huqiang
Chai, Shengfeng
The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title_full The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title_short The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
title_sort complete chloroplast genome sequence of habenaria dentata (orchidaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9196706/
https://www.ncbi.nlm.nih.gov/pubmed/35712546
http://dx.doi.org/10.1080/23802359.2022.2080016
work_keys_str_mv AT zhangjin thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT yangyishan thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT tangjianmin thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT luoyajin thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT lvhuqiang thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT chaishengfeng thecompletechloroplastgenomesequenceofhabenariadentataorchidaceae
AT zhangjin completechloroplastgenomesequenceofhabenariadentataorchidaceae
AT yangyishan completechloroplastgenomesequenceofhabenariadentataorchidaceae
AT tangjianmin completechloroplastgenomesequenceofhabenariadentataorchidaceae
AT luoyajin completechloroplastgenomesequenceofhabenariadentataorchidaceae
AT lvhuqiang completechloroplastgenomesequenceofhabenariadentataorchidaceae
AT chaishengfeng completechloroplastgenomesequenceofhabenariadentataorchidaceae

Ejemplares similares