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A Decade of GigaScience: The Challenges of Gigapixel Pathology Images

In the last decade, the field of computational pathology has advanced at a rapid pace because of the availability of deep neural networks, which achieved their first successes in computer vision tasks in 2012. An important driver for the progress of the field were public competitions, so called ‘Gra...

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Detalles Bibliográficos
Autores principales: Litjens, Geert, Ciompi, Francesco, van der Laak, Jeroen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9197683/
https://www.ncbi.nlm.nih.gov/pubmed/35701372
http://dx.doi.org/10.1093/gigascience/giac056
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author Litjens, Geert
Ciompi, Francesco
van der Laak, Jeroen
author_facet Litjens, Geert
Ciompi, Francesco
van der Laak, Jeroen
author_sort Litjens, Geert
collection PubMed
description In the last decade, the field of computational pathology has advanced at a rapid pace because of the availability of deep neural networks, which achieved their first successes in computer vision tasks in 2012. An important driver for the progress of the field were public competitions, so called ‘Grand Challenges’, in which increasingly large data sets were offered to the public to solve clinically relevant tasks. Going from the first Pathology challenges, which had data obtained from 23 patients, to current challenges sharing data of thousands of patients, performance of developed deep learning solutions has reached (and sometimes surpassed) the level of experienced pathologists for specific tasks. We expect future challenges to broaden the horizon, for instance by combining data from radiology, pathology and tumor genetics, and to extract prognostic and predictive information independent of currently used grading schemes.
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spelling pubmed-91976832022-06-15 A Decade of GigaScience: The Challenges of Gigapixel Pathology Images Litjens, Geert Ciompi, Francesco van der Laak, Jeroen Gigascience Commentary In the last decade, the field of computational pathology has advanced at a rapid pace because of the availability of deep neural networks, which achieved their first successes in computer vision tasks in 2012. An important driver for the progress of the field were public competitions, so called ‘Grand Challenges’, in which increasingly large data sets were offered to the public to solve clinically relevant tasks. Going from the first Pathology challenges, which had data obtained from 23 patients, to current challenges sharing data of thousands of patients, performance of developed deep learning solutions has reached (and sometimes surpassed) the level of experienced pathologists for specific tasks. We expect future challenges to broaden the horizon, for instance by combining data from radiology, pathology and tumor genetics, and to extract prognostic and predictive information independent of currently used grading schemes. Oxford University Press 2022-06-14 /pmc/articles/PMC9197683/ /pubmed/35701372 http://dx.doi.org/10.1093/gigascience/giac056 Text en © The Author(s) 2022. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Litjens, Geert
Ciompi, Francesco
van der Laak, Jeroen
A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title_full A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title_fullStr A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title_full_unstemmed A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title_short A Decade of GigaScience: The Challenges of Gigapixel Pathology Images
title_sort decade of gigascience: the challenges of gigapixel pathology images
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9197683/
https://www.ncbi.nlm.nih.gov/pubmed/35701372
http://dx.doi.org/10.1093/gigascience/giac056
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