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Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer
Our study aimed to explore the effect of cellular senescence and to find potential therapeutic strategies for gastric cancer. Cellular senescence-related genes were acquired from the CellAge database, while gastric cancer data were obtained from GEO and TCGA databases. SMARCA4 had the highest mutati...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9198368/ https://www.ncbi.nlm.nih.gov/pubmed/35719376 http://dx.doi.org/10.3389/fgene.2022.909546 |
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author | Dai, Longfei Wang, Xu Bai, Tao Liu, Jianjun Chen, Bo Yang, Wenqi |
author_facet | Dai, Longfei Wang, Xu Bai, Tao Liu, Jianjun Chen, Bo Yang, Wenqi |
author_sort | Dai, Longfei |
collection | PubMed |
description | Our study aimed to explore the effect of cellular senescence and to find potential therapeutic strategies for gastric cancer. Cellular senescence-related genes were acquired from the CellAge database, while gastric cancer data were obtained from GEO and TCGA databases. SMARCA4 had the highest mutation frequency (6%), and it was linked to higher overall survival (OS) and progression-free survival (PFS). The gastric cancer data in TCGA database served as a training set to construct a prognostic risk score signature, and GEO data were used as a testing set to validate the accuracy of the signature. Patients with the low-risk score group had a longer survival time, while the high-risk score group is the opposite. Patients with low-risk scores had higher immune infiltration and active immune-related pathways. The results of drug sensitivity analysis and the TIDE algorithm showed that the low-risk score group was more susceptible to chemotherapy and immunotherapy. Most patients with mutation genes had a lower risk score than the wild type. Therefore, the risk score signature with cellular senescence-related genes can predict gastric cancer prognosis and identify gastric cancer patients who are sensitive to chemotherapy and immunotherapy. |
format | Online Article Text |
id | pubmed-9198368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91983682022-06-16 Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer Dai, Longfei Wang, Xu Bai, Tao Liu, Jianjun Chen, Bo Yang, Wenqi Front Genet Genetics Our study aimed to explore the effect of cellular senescence and to find potential therapeutic strategies for gastric cancer. Cellular senescence-related genes were acquired from the CellAge database, while gastric cancer data were obtained from GEO and TCGA databases. SMARCA4 had the highest mutation frequency (6%), and it was linked to higher overall survival (OS) and progression-free survival (PFS). The gastric cancer data in TCGA database served as a training set to construct a prognostic risk score signature, and GEO data were used as a testing set to validate the accuracy of the signature. Patients with the low-risk score group had a longer survival time, while the high-risk score group is the opposite. Patients with low-risk scores had higher immune infiltration and active immune-related pathways. The results of drug sensitivity analysis and the TIDE algorithm showed that the low-risk score group was more susceptible to chemotherapy and immunotherapy. Most patients with mutation genes had a lower risk score than the wild type. Therefore, the risk score signature with cellular senescence-related genes can predict gastric cancer prognosis and identify gastric cancer patients who are sensitive to chemotherapy and immunotherapy. Frontiers Media S.A. 2022-06-01 /pmc/articles/PMC9198368/ /pubmed/35719376 http://dx.doi.org/10.3389/fgene.2022.909546 Text en Copyright © 2022 Dai, Wang, Bai, Liu, Chen and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Dai, Longfei Wang, Xu Bai, Tao Liu, Jianjun Chen, Bo Yang, Wenqi Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title | Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title_full | Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title_fullStr | Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title_full_unstemmed | Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title_short | Cellular Senescence-Related Genes: Predicting Prognosis in Gastric Cancer |
title_sort | cellular senescence-related genes: predicting prognosis in gastric cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9198368/ https://www.ncbi.nlm.nih.gov/pubmed/35719376 http://dx.doi.org/10.3389/fgene.2022.909546 |
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