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Machine learning approach to identify adverse events in scientific biomedical literature

Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has b...

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Detalles Bibliográficos
Autores principales: Wewering, Sonja, Pietsch, Claudia, Sumner, Marc, Markó, Kornél, Lülf‐Averhoff, Anna‐Theresa, Baehrens, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9199879/
https://www.ncbi.nlm.nih.gov/pubmed/35266644
http://dx.doi.org/10.1111/cts.13268
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author Wewering, Sonja
Pietsch, Claudia
Sumner, Marc
Markó, Kornél
Lülf‐Averhoff, Anna‐Theresa
Baehrens, David
author_facet Wewering, Sonja
Pietsch, Claudia
Sumner, Marc
Markó, Kornél
Lülf‐Averhoff, Anna‐Theresa
Baehrens, David
author_sort Wewering, Sonja
collection PubMed
description Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has been trained to support this manual intellectual review process, by automatically providing a classification of the literature articles into two types. An algorithm has been designed to automatically classify “relevant articles” which are reporting any kind of drug safety relevant information, and those which are not reporting an adverse drug reaction as “not relevant.” The review process is consisted of many rules and aspects which needed to be taken into consideration. Therefore, for the training of the algorithm, thousands of documents from previous screenings have been used. After several iterations of adjustments and fine tuning, the ML approach is definitively a great achievement in pre‐sorting the articles into “relevant” and “non‐relevant” and supporting the intellectual review process.
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spelling pubmed-91998792022-06-23 Machine learning approach to identify adverse events in scientific biomedical literature Wewering, Sonja Pietsch, Claudia Sumner, Marc Markó, Kornél Lülf‐Averhoff, Anna‐Theresa Baehrens, David Clin Transl Sci Research Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has been trained to support this manual intellectual review process, by automatically providing a classification of the literature articles into two types. An algorithm has been designed to automatically classify “relevant articles” which are reporting any kind of drug safety relevant information, and those which are not reporting an adverse drug reaction as “not relevant.” The review process is consisted of many rules and aspects which needed to be taken into consideration. Therefore, for the training of the algorithm, thousands of documents from previous screenings have been used. After several iterations of adjustments and fine tuning, the ML approach is definitively a great achievement in pre‐sorting the articles into “relevant” and “non‐relevant” and supporting the intellectual review process. John Wiley and Sons Inc. 2022-04-03 2022-06 /pmc/articles/PMC9199879/ /pubmed/35266644 http://dx.doi.org/10.1111/cts.13268 Text en © 2022 The Authors. Clinical and Translational Science published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research
Wewering, Sonja
Pietsch, Claudia
Sumner, Marc
Markó, Kornél
Lülf‐Averhoff, Anna‐Theresa
Baehrens, David
Machine learning approach to identify adverse events in scientific biomedical literature
title Machine learning approach to identify adverse events in scientific biomedical literature
title_full Machine learning approach to identify adverse events in scientific biomedical literature
title_fullStr Machine learning approach to identify adverse events in scientific biomedical literature
title_full_unstemmed Machine learning approach to identify adverse events in scientific biomedical literature
title_short Machine learning approach to identify adverse events in scientific biomedical literature
title_sort machine learning approach to identify adverse events in scientific biomedical literature
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9199879/
https://www.ncbi.nlm.nih.gov/pubmed/35266644
http://dx.doi.org/10.1111/cts.13268
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