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Machine learning approach to identify adverse events in scientific biomedical literature
Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has b...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9199879/ https://www.ncbi.nlm.nih.gov/pubmed/35266644 http://dx.doi.org/10.1111/cts.13268 |
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author | Wewering, Sonja Pietsch, Claudia Sumner, Marc Markó, Kornél Lülf‐Averhoff, Anna‐Theresa Baehrens, David |
author_facet | Wewering, Sonja Pietsch, Claudia Sumner, Marc Markó, Kornél Lülf‐Averhoff, Anna‐Theresa Baehrens, David |
author_sort | Wewering, Sonja |
collection | PubMed |
description | Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has been trained to support this manual intellectual review process, by automatically providing a classification of the literature articles into two types. An algorithm has been designed to automatically classify “relevant articles” which are reporting any kind of drug safety relevant information, and those which are not reporting an adverse drug reaction as “not relevant.” The review process is consisted of many rules and aspects which needed to be taken into consideration. Therefore, for the training of the algorithm, thousands of documents from previous screenings have been used. After several iterations of adjustments and fine tuning, the ML approach is definitively a great achievement in pre‐sorting the articles into “relevant” and “non‐relevant” and supporting the intellectual review process. |
format | Online Article Text |
id | pubmed-9199879 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91998792022-06-23 Machine learning approach to identify adverse events in scientific biomedical literature Wewering, Sonja Pietsch, Claudia Sumner, Marc Markó, Kornél Lülf‐Averhoff, Anna‐Theresa Baehrens, David Clin Transl Sci Research Monitoring the occurrence of adverse events in the scientific literature is a mandatory process in drug marketing surveillance. This is a very time‐consuming and complex task to fulfill the compliance and, most importantly, to ensure patient safety. Therefore, a machine learning (ML) algorithm has been trained to support this manual intellectual review process, by automatically providing a classification of the literature articles into two types. An algorithm has been designed to automatically classify “relevant articles” which are reporting any kind of drug safety relevant information, and those which are not reporting an adverse drug reaction as “not relevant.” The review process is consisted of many rules and aspects which needed to be taken into consideration. Therefore, for the training of the algorithm, thousands of documents from previous screenings have been used. After several iterations of adjustments and fine tuning, the ML approach is definitively a great achievement in pre‐sorting the articles into “relevant” and “non‐relevant” and supporting the intellectual review process. John Wiley and Sons Inc. 2022-04-03 2022-06 /pmc/articles/PMC9199879/ /pubmed/35266644 http://dx.doi.org/10.1111/cts.13268 Text en © 2022 The Authors. Clinical and Translational Science published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Wewering, Sonja Pietsch, Claudia Sumner, Marc Markó, Kornél Lülf‐Averhoff, Anna‐Theresa Baehrens, David Machine learning approach to identify adverse events in scientific biomedical literature |
title | Machine learning approach to identify adverse events in scientific biomedical literature |
title_full | Machine learning approach to identify adverse events in scientific biomedical literature |
title_fullStr | Machine learning approach to identify adverse events in scientific biomedical literature |
title_full_unstemmed | Machine learning approach to identify adverse events in scientific biomedical literature |
title_short | Machine learning approach to identify adverse events in scientific biomedical literature |
title_sort | machine learning approach to identify adverse events in scientific biomedical literature |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9199879/ https://www.ncbi.nlm.nih.gov/pubmed/35266644 http://dx.doi.org/10.1111/cts.13268 |
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