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Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia
miRNAs are non-coding, single-stranded RNAs and are known to regulate the expression of genes during the post-transcription process. Seabuckthorn (Hippophae sp.; Elaeagnaceae) plant grows in different regions in harsh environmental conditions and is tolerant to various abiotic stress prevailing in t...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200607/ https://www.ncbi.nlm.nih.gov/pubmed/35815195 http://dx.doi.org/10.6026/97320630018061 |
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author | Chaudhary, Parneeta Sharma, Prakash Chand |
author_facet | Chaudhary, Parneeta Sharma, Prakash Chand |
author_sort | Chaudhary, Parneeta |
collection | PubMed |
description | miRNAs are non-coding, single-stranded RNAs and are known to regulate the expression of genes during the post-transcription process. Seabuckthorn (Hippophae sp.; Elaeagnaceae) plant grows in different regions in harsh environmental conditions and is tolerant to various abiotic stress prevailing in the Indian Himalayas. Therefore, it is of interest to document the functional assignment of miRNA target genes to abiotic stress in Hippophae salicifolia using available bioinformatics tools. We identified eleven miRNA target genes in the seabuckthorn transcriptome. The expression analysis of these miRNA target genes provides important information about the regulation of stressresponsive defense mechanisms in seabuckthorn. Understanding of the role of these putative miRNAs and their target genes in cold and heat tolerance provides insights to determine the potential targets for the exploitation towards the development of stress-tolerant crop plants. |
format | Online Article Text |
id | pubmed-9200607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-92006072022-07-07 Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia Chaudhary, Parneeta Sharma, Prakash Chand Bioinformation Research Article miRNAs are non-coding, single-stranded RNAs and are known to regulate the expression of genes during the post-transcription process. Seabuckthorn (Hippophae sp.; Elaeagnaceae) plant grows in different regions in harsh environmental conditions and is tolerant to various abiotic stress prevailing in the Indian Himalayas. Therefore, it is of interest to document the functional assignment of miRNA target genes to abiotic stress in Hippophae salicifolia using available bioinformatics tools. We identified eleven miRNA target genes in the seabuckthorn transcriptome. The expression analysis of these miRNA target genes provides important information about the regulation of stressresponsive defense mechanisms in seabuckthorn. Understanding of the role of these putative miRNAs and their target genes in cold and heat tolerance provides insights to determine the potential targets for the exploitation towards the development of stress-tolerant crop plants. Biomedical Informatics 2022-01-31 /pmc/articles/PMC9200607/ /pubmed/35815195 http://dx.doi.org/10.6026/97320630018061 Text en © 2022 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Chaudhary, Parneeta Sharma, Prakash Chand Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title | Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title_full | Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title_fullStr | Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title_full_unstemmed | Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title_short | Functional validation of miRNA target genes in abiotic stress in Hippophae salicifolia |
title_sort | functional validation of mirna target genes in abiotic stress in hippophae salicifolia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200607/ https://www.ncbi.nlm.nih.gov/pubmed/35815195 http://dx.doi.org/10.6026/97320630018061 |
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