Insights from the analysis of draft genome sequence of Crocus sativus L.

Saffron (Crocus sativus L.) is the low yielding plant of medicinal and economic importance. Therefore, it is of interest to report the draft genome sequence of C. sativus. The draft genome of C. sativus has been assembled using Illumina sequencing and is 3.01 Gb long covering 84.24% of genome. C. sa...

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Autores principales: Ambardar, Sheetal, Vakhlu, Jyoti, Sowdhamini, Ramanathan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2022
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200609/
https://www.ncbi.nlm.nih.gov/pubmed/35815202
http://dx.doi.org/10.6026/97320630018001
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author Ambardar, Sheetal
Vakhlu, Jyoti
Sowdhamini, Ramanathan
author_facet Ambardar, Sheetal
Vakhlu, Jyoti
Sowdhamini, Ramanathan
author_sort Ambardar, Sheetal
collection PubMed
description Saffron (Crocus sativus L.) is the low yielding plant of medicinal and economic importance. Therefore, it is of interest to report the draft genome sequence of C. sativus. The draft genome of C. sativus has been assembled using Illumina sequencing and is 3.01 Gb long covering 84.24% of genome. C. sativus genome annotation identified 53,546 functional genes (including 5726 transcription factors), 862,275 repeats and 964,231 SSR markers. The genes involved in the apocarotenoids biosynthesis pathway (crocin, crocetin, picrocrocin, and safranal) were found in the draft genome analysis.
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spelling pubmed-92006092022-07-07 Insights from the analysis of draft genome sequence of Crocus sativus L. Ambardar, Sheetal Vakhlu, Jyoti Sowdhamini, Ramanathan Bioinformation Research Article Saffron (Crocus sativus L.) is the low yielding plant of medicinal and economic importance. Therefore, it is of interest to report the draft genome sequence of C. sativus. The draft genome of C. sativus has been assembled using Illumina sequencing and is 3.01 Gb long covering 84.24% of genome. C. sativus genome annotation identified 53,546 functional genes (including 5726 transcription factors), 862,275 repeats and 964,231 SSR markers. The genes involved in the apocarotenoids biosynthesis pathway (crocin, crocetin, picrocrocin, and safranal) were found in the draft genome analysis. Biomedical Informatics 2022-01-31 /pmc/articles/PMC9200609/ /pubmed/35815202 http://dx.doi.org/10.6026/97320630018001 Text en © 2022 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Ambardar, Sheetal
Vakhlu, Jyoti
Sowdhamini, Ramanathan
Insights from the analysis of draft genome sequence of Crocus sativus L.
title Insights from the analysis of draft genome sequence of Crocus sativus L.
title_full Insights from the analysis of draft genome sequence of Crocus sativus L.
title_fullStr Insights from the analysis of draft genome sequence of Crocus sativus L.
title_full_unstemmed Insights from the analysis of draft genome sequence of Crocus sativus L.
title_short Insights from the analysis of draft genome sequence of Crocus sativus L.
title_sort insights from the analysis of draft genome sequence of crocus sativus l.
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200609/
https://www.ncbi.nlm.nih.gov/pubmed/35815202
http://dx.doi.org/10.6026/97320630018001
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