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A machine learning based model accurately predicts cellular response to electric fields in multiple cell types
Many cell types migrate in response to naturally generated electric fields. Furthermore, it has been suggested that the external application of an electric field may be used to intervene in and optimize natural processes such as wound healing. Precise cell guidance suitable for such optimization may...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200721/ https://www.ncbi.nlm.nih.gov/pubmed/35705588 http://dx.doi.org/10.1038/s41598-022-13925-4 |
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author | Sargent, Brett Jafari, Mohammad Marquez, Giovanny Mehta, Abijeet Singh Sun, Yao-Hui Yang, Hsin-ya Zhu, Kan Isseroff, Roslyn Rivkah Zhao, Min Gomez, Marcella |
author_facet | Sargent, Brett Jafari, Mohammad Marquez, Giovanny Mehta, Abijeet Singh Sun, Yao-Hui Yang, Hsin-ya Zhu, Kan Isseroff, Roslyn Rivkah Zhao, Min Gomez, Marcella |
author_sort | Sargent, Brett |
collection | PubMed |
description | Many cell types migrate in response to naturally generated electric fields. Furthermore, it has been suggested that the external application of an electric field may be used to intervene in and optimize natural processes such as wound healing. Precise cell guidance suitable for such optimization may rely on predictive models of cell migration, which do not generalize. Here, we present a machine learning model that can forecast directedness of cell migration given a timeseries of previous directedness and electric field values. This model is trained using time series galvanotaxis data of mammalian cranial neural crest cells obtained through time-lapse microscopy of cells cultured at 37 °C in a galvanotaxis chamber at ambient pressure. Next, we show that our modeling approach can be used for a variety of cell types and experimental conditions with very limited training data using transfer learning methods. We adapt the model to predict cell behavior for keratocytes (room temperature, ~ 18–20 °C) and keratinocytes (37 °C) under similar experimental conditions with a small dataset (~ 2–5 cells). Finally, this model can be used to perform in silico studies by simulating cell migration lines under time-varying and unseen electric fields. We demonstrate this by simulating feedback control on cell migration using a proportional–integral–derivative (PID) controller. This data-driven approach provides predictive models of cell migration that may be suitable for designing electric field based cellular control mechanisms for applications in precision medicine such as wound healing. |
format | Online Article Text |
id | pubmed-9200721 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92007212022-06-17 A machine learning based model accurately predicts cellular response to electric fields in multiple cell types Sargent, Brett Jafari, Mohammad Marquez, Giovanny Mehta, Abijeet Singh Sun, Yao-Hui Yang, Hsin-ya Zhu, Kan Isseroff, Roslyn Rivkah Zhao, Min Gomez, Marcella Sci Rep Article Many cell types migrate in response to naturally generated electric fields. Furthermore, it has been suggested that the external application of an electric field may be used to intervene in and optimize natural processes such as wound healing. Precise cell guidance suitable for such optimization may rely on predictive models of cell migration, which do not generalize. Here, we present a machine learning model that can forecast directedness of cell migration given a timeseries of previous directedness and electric field values. This model is trained using time series galvanotaxis data of mammalian cranial neural crest cells obtained through time-lapse microscopy of cells cultured at 37 °C in a galvanotaxis chamber at ambient pressure. Next, we show that our modeling approach can be used for a variety of cell types and experimental conditions with very limited training data using transfer learning methods. We adapt the model to predict cell behavior for keratocytes (room temperature, ~ 18–20 °C) and keratinocytes (37 °C) under similar experimental conditions with a small dataset (~ 2–5 cells). Finally, this model can be used to perform in silico studies by simulating cell migration lines under time-varying and unseen electric fields. We demonstrate this by simulating feedback control on cell migration using a proportional–integral–derivative (PID) controller. This data-driven approach provides predictive models of cell migration that may be suitable for designing electric field based cellular control mechanisms for applications in precision medicine such as wound healing. Nature Publishing Group UK 2022-06-15 /pmc/articles/PMC9200721/ /pubmed/35705588 http://dx.doi.org/10.1038/s41598-022-13925-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Sargent, Brett Jafari, Mohammad Marquez, Giovanny Mehta, Abijeet Singh Sun, Yao-Hui Yang, Hsin-ya Zhu, Kan Isseroff, Roslyn Rivkah Zhao, Min Gomez, Marcella A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title | A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title_full | A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title_fullStr | A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title_full_unstemmed | A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title_short | A machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
title_sort | machine learning based model accurately predicts cellular response to electric fields in multiple cell types |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200721/ https://www.ncbi.nlm.nih.gov/pubmed/35705588 http://dx.doi.org/10.1038/s41598-022-13925-4 |
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