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Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential
Light-induced chemical processes are ubiquitous in nature and have widespread technological applications. For example, photoisomerization can allow a drug with a photo-switchable scaffold such as azobenzene to be activated with light. In principle, photoswitches with desired photophysical properties...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200747/ https://www.ncbi.nlm.nih.gov/pubmed/35705543 http://dx.doi.org/10.1038/s41467-022-30999-w |
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author | Axelrod, Simon Shakhnovich, Eugene Gómez-Bombarelli, Rafael |
author_facet | Axelrod, Simon Shakhnovich, Eugene Gómez-Bombarelli, Rafael |
author_sort | Axelrod, Simon |
collection | PubMed |
description | Light-induced chemical processes are ubiquitous in nature and have widespread technological applications. For example, photoisomerization can allow a drug with a photo-switchable scaffold such as azobenzene to be activated with light. In principle, photoswitches with desired photophysical properties like high isomerization quantum yields can be identified through virtual screening with reactive simulations. In practice, these simulations are rarely used for screening, since they require hundreds of trajectories and expensive quantum chemical methods to account for non-adiabatic excited state effects. Here we introduce a diabatic artificial neural network (DANN), based on diabatic states, to accelerate such simulations for azobenzene derivatives. The network is six orders of magnitude faster than the quantum chemistry method used for training. DANN is transferable to azobenzene molecules outside the training set, predicting quantum yields for unseen species that are correlated with experiment. We use the model to virtually screen 3100 hypothetical molecules, and identify novel species with high predicted quantum yields. The model predictions are confirmed using high-accuracy non-adiabatic dynamics. Our results pave the way for fast and accurate virtual screening of photoactive compounds. |
format | Online Article Text |
id | pubmed-9200747 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92007472022-06-17 Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential Axelrod, Simon Shakhnovich, Eugene Gómez-Bombarelli, Rafael Nat Commun Article Light-induced chemical processes are ubiquitous in nature and have widespread technological applications. For example, photoisomerization can allow a drug with a photo-switchable scaffold such as azobenzene to be activated with light. In principle, photoswitches with desired photophysical properties like high isomerization quantum yields can be identified through virtual screening with reactive simulations. In practice, these simulations are rarely used for screening, since they require hundreds of trajectories and expensive quantum chemical methods to account for non-adiabatic excited state effects. Here we introduce a diabatic artificial neural network (DANN), based on diabatic states, to accelerate such simulations for azobenzene derivatives. The network is six orders of magnitude faster than the quantum chemistry method used for training. DANN is transferable to azobenzene molecules outside the training set, predicting quantum yields for unseen species that are correlated with experiment. We use the model to virtually screen 3100 hypothetical molecules, and identify novel species with high predicted quantum yields. The model predictions are confirmed using high-accuracy non-adiabatic dynamics. Our results pave the way for fast and accurate virtual screening of photoactive compounds. Nature Publishing Group UK 2022-06-15 /pmc/articles/PMC9200747/ /pubmed/35705543 http://dx.doi.org/10.1038/s41467-022-30999-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Axelrod, Simon Shakhnovich, Eugene Gómez-Bombarelli, Rafael Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title | Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title_full | Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title_fullStr | Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title_full_unstemmed | Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title_short | Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
title_sort | excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9200747/ https://www.ncbi.nlm.nih.gov/pubmed/35705543 http://dx.doi.org/10.1038/s41467-022-30999-w |
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