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AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis

Image segmentation plays an essential role in medical imaging analysis such as tumor boundary extraction. Recently, deep learning techniques have dramatically improved performance for image segmentation. However, an important factor preventing deep neural networks from going further is the informati...

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Autores principales: Yang, Minqiang, Zhang, Yuhong, Chen, Haoning, Wang, Wei, Ni, Haixu, Chen, Xinlong, Li, Zhuoheng, Mao, Chengsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202000/
https://www.ncbi.nlm.nih.gov/pubmed/35719964
http://dx.doi.org/10.3389/fonc.2022.894970
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author Yang, Minqiang
Zhang, Yuhong
Chen, Haoning
Wang, Wei
Ni, Haixu
Chen, Xinlong
Li, Zhuoheng
Mao, Chengsheng
author_facet Yang, Minqiang
Zhang, Yuhong
Chen, Haoning
Wang, Wei
Ni, Haixu
Chen, Xinlong
Li, Zhuoheng
Mao, Chengsheng
author_sort Yang, Minqiang
collection PubMed
description Image segmentation plays an essential role in medical imaging analysis such as tumor boundary extraction. Recently, deep learning techniques have dramatically improved performance for image segmentation. However, an important factor preventing deep neural networks from going further is the information loss during the information propagation process. In this article, we present AX-Unet, a deep learning framework incorporating a modified atrous spatial pyramid pooling module to learn the location information and to extract multi-level contextual information to reduce information loss during downsampling. We also introduce a special group convolution operation on the feature map at each level to achieve information decoupling between channels. In addition, we propose an explicit boundary-aware loss function to tackle the blurry boundary problem. We evaluate our model on two public Pancreas-CT datasets, NIH Pancreas-CT dataset, and the pancreas part in medical segmentation decathlon (MSD) medical dataset. The experimental results validate that our model can outperform the state-of-the-art methods in pancreas CT image segmentation. By comparing the extracted feature output of our model, we find that the pancreatic region of normal people and patients with pancreatic tumors shows significant differences. This could provide a promising and reliable way to assist physicians for the screening of pancreatic tumors.
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spelling pubmed-92020002022-06-17 AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis Yang, Minqiang Zhang, Yuhong Chen, Haoning Wang, Wei Ni, Haixu Chen, Xinlong Li, Zhuoheng Mao, Chengsheng Front Oncol Oncology Image segmentation plays an essential role in medical imaging analysis such as tumor boundary extraction. Recently, deep learning techniques have dramatically improved performance for image segmentation. However, an important factor preventing deep neural networks from going further is the information loss during the information propagation process. In this article, we present AX-Unet, a deep learning framework incorporating a modified atrous spatial pyramid pooling module to learn the location information and to extract multi-level contextual information to reduce information loss during downsampling. We also introduce a special group convolution operation on the feature map at each level to achieve information decoupling between channels. In addition, we propose an explicit boundary-aware loss function to tackle the blurry boundary problem. We evaluate our model on two public Pancreas-CT datasets, NIH Pancreas-CT dataset, and the pancreas part in medical segmentation decathlon (MSD) medical dataset. The experimental results validate that our model can outperform the state-of-the-art methods in pancreas CT image segmentation. By comparing the extracted feature output of our model, we find that the pancreatic region of normal people and patients with pancreatic tumors shows significant differences. This could provide a promising and reliable way to assist physicians for the screening of pancreatic tumors. Frontiers Media S.A. 2022-06-02 /pmc/articles/PMC9202000/ /pubmed/35719964 http://dx.doi.org/10.3389/fonc.2022.894970 Text en Copyright © 2022 Yang, Zhang, Chen, Wang, Ni, Chen, Li and Mao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Yang, Minqiang
Zhang, Yuhong
Chen, Haoning
Wang, Wei
Ni, Haixu
Chen, Xinlong
Li, Zhuoheng
Mao, Chengsheng
AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title_full AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title_fullStr AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title_full_unstemmed AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title_short AX-Unet: A Deep Learning Framework for Image Segmentation to Assist Pancreatic Tumor Diagnosis
title_sort ax-unet: a deep learning framework for image segmentation to assist pancreatic tumor diagnosis
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202000/
https://www.ncbi.nlm.nih.gov/pubmed/35719964
http://dx.doi.org/10.3389/fonc.2022.894970
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