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Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related p...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202200/ https://www.ncbi.nlm.nih.gov/pubmed/35578132 http://dx.doi.org/10.1038/s41593-022-01059-9 |
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author | He, Tong An, Lijun Chen, Pansheng Chen, Jianzhong Feng, Jiashi Bzdok, Danilo Holmes, Avram J Eickhoff, Simon B. Thomas Yeo, B.T. |
author_facet | He, Tong An, Lijun Chen, Pansheng Chen, Jianzhong Feng, Jiashi Bzdok, Danilo Holmes, Avram J Eickhoff, Simon B. Thomas Yeo, B.T. |
author_sort | He, Tong |
collection | PubMed |
description | We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related phenotypes in some large-scale dataset. Meta-matching exploits these correlations to boost prediction in the boutique study. We apply meta-matching to predict non-brain-imaging phenotypes from resting-state functional connectivity. Using the UK Biobank (N=36,848) and HCP (N=1,019) datasets, we demonstrate that meta-matching can greatly boost the prediction of new phenotypes in small independent datasets in many scenarios. For example, translating a UK Biobank model to 100 HCP participants yields an 8-fold improvement in variance explained with an average absolute gain of 4.0% (min=−0.2%, max=16.0%) across 35 phenotypes. With a growing number of large-scale datasets collecting increasingly diverse phenotypes, our results represent a lower bound on the potential of meta-matching. |
format | Online Article Text |
id | pubmed-9202200 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
record_format | MEDLINE/PubMed |
spelling | pubmed-92022002022-11-16 Meta-matching as a simple framework to translate phenotypic predictive models from big to small data He, Tong An, Lijun Chen, Pansheng Chen, Jianzhong Feng, Jiashi Bzdok, Danilo Holmes, Avram J Eickhoff, Simon B. Thomas Yeo, B.T. Nat Neurosci Article We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related phenotypes in some large-scale dataset. Meta-matching exploits these correlations to boost prediction in the boutique study. We apply meta-matching to predict non-brain-imaging phenotypes from resting-state functional connectivity. Using the UK Biobank (N=36,848) and HCP (N=1,019) datasets, we demonstrate that meta-matching can greatly boost the prediction of new phenotypes in small independent datasets in many scenarios. For example, translating a UK Biobank model to 100 HCP participants yields an 8-fold improvement in variance explained with an average absolute gain of 4.0% (min=−0.2%, max=16.0%) across 35 phenotypes. With a growing number of large-scale datasets collecting increasingly diverse phenotypes, our results represent a lower bound on the potential of meta-matching. 2022-06 2022-05-16 /pmc/articles/PMC9202200/ /pubmed/35578132 http://dx.doi.org/10.1038/s41593-022-01059-9 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: https://www.springernature.com/gp/open-research/policies/accepted-manuscript-terms |
spellingShingle | Article He, Tong An, Lijun Chen, Pansheng Chen, Jianzhong Feng, Jiashi Bzdok, Danilo Holmes, Avram J Eickhoff, Simon B. Thomas Yeo, B.T. Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title | Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title_full | Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title_fullStr | Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title_full_unstemmed | Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title_short | Meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
title_sort | meta-matching as a simple framework to translate phenotypic predictive models from big to small data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202200/ https://www.ncbi.nlm.nih.gov/pubmed/35578132 http://dx.doi.org/10.1038/s41593-022-01059-9 |
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