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Meta-matching as a simple framework to translate phenotypic predictive models from big to small data

We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related p...

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Autores principales: He, Tong, An, Lijun, Chen, Pansheng, Chen, Jianzhong, Feng, Jiashi, Bzdok, Danilo, Holmes, Avram J, Eickhoff, Simon B., Thomas Yeo, B.T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202200/
https://www.ncbi.nlm.nih.gov/pubmed/35578132
http://dx.doi.org/10.1038/s41593-022-01059-9
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author He, Tong
An, Lijun
Chen, Pansheng
Chen, Jianzhong
Feng, Jiashi
Bzdok, Danilo
Holmes, Avram J
Eickhoff, Simon B.
Thomas Yeo, B.T.
author_facet He, Tong
An, Lijun
Chen, Pansheng
Chen, Jianzhong
Feng, Jiashi
Bzdok, Danilo
Holmes, Avram J
Eickhoff, Simon B.
Thomas Yeo, B.T.
author_sort He, Tong
collection PubMed
description We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related phenotypes in some large-scale dataset. Meta-matching exploits these correlations to boost prediction in the boutique study. We apply meta-matching to predict non-brain-imaging phenotypes from resting-state functional connectivity. Using the UK Biobank (N=36,848) and HCP (N=1,019) datasets, we demonstrate that meta-matching can greatly boost the prediction of new phenotypes in small independent datasets in many scenarios. For example, translating a UK Biobank model to 100 HCP participants yields an 8-fold improvement in variance explained with an average absolute gain of 4.0% (min=−0.2%, max=16.0%) across 35 phenotypes. With a growing number of large-scale datasets collecting increasingly diverse phenotypes, our results represent a lower bound on the potential of meta-matching.
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spelling pubmed-92022002022-11-16 Meta-matching as a simple framework to translate phenotypic predictive models from big to small data He, Tong An, Lijun Chen, Pansheng Chen, Jianzhong Feng, Jiashi Bzdok, Danilo Holmes, Avram J Eickhoff, Simon B. Thomas Yeo, B.T. Nat Neurosci Article We propose a simple framework – meta-matching – to translate predictive models from large-scale datasets to new unseen non-brain-imaging phenotypes in small-scale studies. The key consideration is that a unique phenotype from a boutique study likely correlates with (but is not the same as) related phenotypes in some large-scale dataset. Meta-matching exploits these correlations to boost prediction in the boutique study. We apply meta-matching to predict non-brain-imaging phenotypes from resting-state functional connectivity. Using the UK Biobank (N=36,848) and HCP (N=1,019) datasets, we demonstrate that meta-matching can greatly boost the prediction of new phenotypes in small independent datasets in many scenarios. For example, translating a UK Biobank model to 100 HCP participants yields an 8-fold improvement in variance explained with an average absolute gain of 4.0% (min=−0.2%, max=16.0%) across 35 phenotypes. With a growing number of large-scale datasets collecting increasingly diverse phenotypes, our results represent a lower bound on the potential of meta-matching. 2022-06 2022-05-16 /pmc/articles/PMC9202200/ /pubmed/35578132 http://dx.doi.org/10.1038/s41593-022-01059-9 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: https://www.springernature.com/gp/open-research/policies/accepted-manuscript-terms
spellingShingle Article
He, Tong
An, Lijun
Chen, Pansheng
Chen, Jianzhong
Feng, Jiashi
Bzdok, Danilo
Holmes, Avram J
Eickhoff, Simon B.
Thomas Yeo, B.T.
Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title_full Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title_fullStr Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title_full_unstemmed Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title_short Meta-matching as a simple framework to translate phenotypic predictive models from big to small data
title_sort meta-matching as a simple framework to translate phenotypic predictive models from big to small data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202200/
https://www.ncbi.nlm.nih.gov/pubmed/35578132
http://dx.doi.org/10.1038/s41593-022-01059-9
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