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Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
[Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202311/ https://www.ncbi.nlm.nih.gov/pubmed/35617155 http://dx.doi.org/10.1021/acs.jctc.2c00152 |
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author | Invernizzi, Michele Parrinello, Michele |
author_facet | Invernizzi, Michele Parrinello, Michele |
author_sort | Invernizzi, Michele |
collection | PubMed |
description | [Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that when the collective variables are suboptimal, there is an exploration–convergence tradeoff, and one must choose between a quickly converging bias that will lead to fewer transitions or a slower to converge bias that can explore the phase space more efficiently but might require a much longer time to produce an accurate free energy estimate. The recently proposed on-the-fly probability enhanced sampling (OPES) method focuses on fast convergence, but there are cases where fast exploration is preferred instead. For this reason, we introduce a new variant of the OPES method that focuses on quickly escaping metastable states at the expense of convergence speed. We illustrate the benefits of this approach in prototypical systems and show that it outperforms the popular metadynamics method. |
format | Online Article Text |
id | pubmed-9202311 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-92023112022-06-17 Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling Invernizzi, Michele Parrinello, Michele J Chem Theory Comput [Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that when the collective variables are suboptimal, there is an exploration–convergence tradeoff, and one must choose between a quickly converging bias that will lead to fewer transitions or a slower to converge bias that can explore the phase space more efficiently but might require a much longer time to produce an accurate free energy estimate. The recently proposed on-the-fly probability enhanced sampling (OPES) method focuses on fast convergence, but there are cases where fast exploration is preferred instead. For this reason, we introduce a new variant of the OPES method that focuses on quickly escaping metastable states at the expense of convergence speed. We illustrate the benefits of this approach in prototypical systems and show that it outperforms the popular metadynamics method. American Chemical Society 2022-05-26 2022-06-14 /pmc/articles/PMC9202311/ /pubmed/35617155 http://dx.doi.org/10.1021/acs.jctc.2c00152 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Invernizzi, Michele Parrinello, Michele Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling |
title | Exploration vs Convergence
Speed in Adaptive-Bias Enhanced Sampling |
title_full | Exploration vs Convergence
Speed in Adaptive-Bias Enhanced Sampling |
title_fullStr | Exploration vs Convergence
Speed in Adaptive-Bias Enhanced Sampling |
title_full_unstemmed | Exploration vs Convergence
Speed in Adaptive-Bias Enhanced Sampling |
title_short | Exploration vs Convergence
Speed in Adaptive-Bias Enhanced Sampling |
title_sort | exploration vs convergence
speed in adaptive-bias enhanced sampling |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202311/ https://www.ncbi.nlm.nih.gov/pubmed/35617155 http://dx.doi.org/10.1021/acs.jctc.2c00152 |
work_keys_str_mv | AT invernizzimichele explorationvsconvergencespeedinadaptivebiasenhancedsampling AT parrinellomichele explorationvsconvergencespeedinadaptivebiasenhancedsampling |