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Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling

[Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that...

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Autores principales: Invernizzi, Michele, Parrinello, Michele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202311/
https://www.ncbi.nlm.nih.gov/pubmed/35617155
http://dx.doi.org/10.1021/acs.jctc.2c00152
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author Invernizzi, Michele
Parrinello, Michele
author_facet Invernizzi, Michele
Parrinello, Michele
author_sort Invernizzi, Michele
collection PubMed
description [Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that when the collective variables are suboptimal, there is an exploration–convergence tradeoff, and one must choose between a quickly converging bias that will lead to fewer transitions or a slower to converge bias that can explore the phase space more efficiently but might require a much longer time to produce an accurate free energy estimate. The recently proposed on-the-fly probability enhanced sampling (OPES) method focuses on fast convergence, but there are cases where fast exploration is preferred instead. For this reason, we introduce a new variant of the OPES method that focuses on quickly escaping metastable states at the expense of convergence speed. We illustrate the benefits of this approach in prototypical systems and show that it outperforms the popular metadynamics method.
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spelling pubmed-92023112022-06-17 Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling Invernizzi, Michele Parrinello, Michele J Chem Theory Comput [Image: see text] In adaptive-bias enhanced sampling methods, a bias potential is added to the system to drive transitions between metastable states. The bias potential is a function of a few collective variables and is gradually modified according to the underlying free energy surface. We show that when the collective variables are suboptimal, there is an exploration–convergence tradeoff, and one must choose between a quickly converging bias that will lead to fewer transitions or a slower to converge bias that can explore the phase space more efficiently but might require a much longer time to produce an accurate free energy estimate. The recently proposed on-the-fly probability enhanced sampling (OPES) method focuses on fast convergence, but there are cases where fast exploration is preferred instead. For this reason, we introduce a new variant of the OPES method that focuses on quickly escaping metastable states at the expense of convergence speed. We illustrate the benefits of this approach in prototypical systems and show that it outperforms the popular metadynamics method. American Chemical Society 2022-05-26 2022-06-14 /pmc/articles/PMC9202311/ /pubmed/35617155 http://dx.doi.org/10.1021/acs.jctc.2c00152 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Invernizzi, Michele
Parrinello, Michele
Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title_full Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title_fullStr Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title_full_unstemmed Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title_short Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling
title_sort exploration vs convergence speed in adaptive-bias enhanced sampling
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202311/
https://www.ncbi.nlm.nih.gov/pubmed/35617155
http://dx.doi.org/10.1021/acs.jctc.2c00152
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