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Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation
PURPOSE: The purpose of this article was to investigate the mechanism of immune dysregulation of COVID-19-related proteins in spinal tuberculosis (STB). METHODS: Clinical data were collected to construct a nomogram model. C-index, calibration curve, ROC curve, and DCA curve were used to assess the p...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202521/ https://www.ncbi.nlm.nih.gov/pubmed/35720320 http://dx.doi.org/10.3389/fimmu.2022.882651 |
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author | Chen, Liyi Liu, Chong Liang, Tuo Ye, Zhen Huang, Shengsheng Chen, Jiarui Sun, Xuhua Yi, Ming Zhou, Chenxing Jiang, Jie Chen, Tianyou Li, Hao Chen, Wuhua Guo, Hao Chen, Wenkang Yao, Yuanlin Liao, Shian Yu, Chaojie Wu, Shaofeng Fan, Binguang Gan, Zhaoping Zhan, Xinli |
author_facet | Chen, Liyi Liu, Chong Liang, Tuo Ye, Zhen Huang, Shengsheng Chen, Jiarui Sun, Xuhua Yi, Ming Zhou, Chenxing Jiang, Jie Chen, Tianyou Li, Hao Chen, Wuhua Guo, Hao Chen, Wenkang Yao, Yuanlin Liao, Shian Yu, Chaojie Wu, Shaofeng Fan, Binguang Gan, Zhaoping Zhan, Xinli |
author_sort | Chen, Liyi |
collection | PubMed |
description | PURPOSE: The purpose of this article was to investigate the mechanism of immune dysregulation of COVID-19-related proteins in spinal tuberculosis (STB). METHODS: Clinical data were collected to construct a nomogram model. C-index, calibration curve, ROC curve, and DCA curve were used to assess the predictive ability and accuracy of the model. Additionally, 10 intervertebral disc samples were collected for protein identification. Bioinformatics was used to analyze differentially expressed proteins (DEPs), including immune cells analysis, Gene Ontology (GO) and KEGG pathway enrichment analysis, and protein-protein interaction networks (PPI). RESULTS: The nomogram predicted risk of STB ranging from 0.01 to 0.994. The C-index and AUC in the training set were 0.872 and 0.862, respectively. The results in the external validation set were consistent with the training set. Immune cells scores indicated that B cells naive in STB tissues were significantly lower than non-TB spinal tissues. Hub proteins were calculated by Degree, Closeness, and MCC methods. The main KEGG pathway included Coronavirus disease-COVID-19. There were 9 key proteins in the intersection of COVID-19-related proteins and hub proteins. There was a negative correlation between B cells naive and RPL19. COVID-19-related proteins were associated with immune genes. CONCLUSION: Lymphocytes were predictive factors for the diagnosis of STB. Immune cells showed low expression in STB. Nine COVID-19-related proteins were involved in STB mechanisms. These nine key proteins may suppress the immune mechanism of STB by regulating the expression of immune genes. |
format | Online Article Text |
id | pubmed-9202521 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92025212022-06-17 Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation Chen, Liyi Liu, Chong Liang, Tuo Ye, Zhen Huang, Shengsheng Chen, Jiarui Sun, Xuhua Yi, Ming Zhou, Chenxing Jiang, Jie Chen, Tianyou Li, Hao Chen, Wuhua Guo, Hao Chen, Wenkang Yao, Yuanlin Liao, Shian Yu, Chaojie Wu, Shaofeng Fan, Binguang Gan, Zhaoping Zhan, Xinli Front Immunol Immunology PURPOSE: The purpose of this article was to investigate the mechanism of immune dysregulation of COVID-19-related proteins in spinal tuberculosis (STB). METHODS: Clinical data were collected to construct a nomogram model. C-index, calibration curve, ROC curve, and DCA curve were used to assess the predictive ability and accuracy of the model. Additionally, 10 intervertebral disc samples were collected for protein identification. Bioinformatics was used to analyze differentially expressed proteins (DEPs), including immune cells analysis, Gene Ontology (GO) and KEGG pathway enrichment analysis, and protein-protein interaction networks (PPI). RESULTS: The nomogram predicted risk of STB ranging from 0.01 to 0.994. The C-index and AUC in the training set were 0.872 and 0.862, respectively. The results in the external validation set were consistent with the training set. Immune cells scores indicated that B cells naive in STB tissues were significantly lower than non-TB spinal tissues. Hub proteins were calculated by Degree, Closeness, and MCC methods. The main KEGG pathway included Coronavirus disease-COVID-19. There were 9 key proteins in the intersection of COVID-19-related proteins and hub proteins. There was a negative correlation between B cells naive and RPL19. COVID-19-related proteins were associated with immune genes. CONCLUSION: Lymphocytes were predictive factors for the diagnosis of STB. Immune cells showed low expression in STB. Nine COVID-19-related proteins were involved in STB mechanisms. These nine key proteins may suppress the immune mechanism of STB by regulating the expression of immune genes. Frontiers Media S.A. 2022-06-02 /pmc/articles/PMC9202521/ /pubmed/35720320 http://dx.doi.org/10.3389/fimmu.2022.882651 Text en Copyright © 2022 Chen, Liu, Liang, Ye, Huang, Chen, Sun, Yi, Zhou, Jiang, Chen, Li, Chen, Guo, Chen, Yao, Liao, Yu, Wu, Fan, Gan and Zhan https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Chen, Liyi Liu, Chong Liang, Tuo Ye, Zhen Huang, Shengsheng Chen, Jiarui Sun, Xuhua Yi, Ming Zhou, Chenxing Jiang, Jie Chen, Tianyou Li, Hao Chen, Wuhua Guo, Hao Chen, Wenkang Yao, Yuanlin Liao, Shian Yu, Chaojie Wu, Shaofeng Fan, Binguang Gan, Zhaoping Zhan, Xinli Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title | Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title_full | Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title_fullStr | Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title_full_unstemmed | Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title_short | Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation |
title_sort | mechanism of covid-19-related proteins in spinal tuberculosis: immune dysregulation |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202521/ https://www.ncbi.nlm.nih.gov/pubmed/35720320 http://dx.doi.org/10.3389/fimmu.2022.882651 |
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