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A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202559/ https://www.ncbi.nlm.nih.gov/pubmed/35719987 http://dx.doi.org/10.3389/fonc.2022.873268 |
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author | Ali, Tahir Mohammad Nawaz, Ali Ur Rehman, Attique Ahmad, Rana Zeeshan Javed, Abdul Rehman Gadekallu, Thippa Reddy Chen, Chin-Ling Wu, Chih-Ming |
author_facet | Ali, Tahir Mohammad Nawaz, Ali Ur Rehman, Attique Ahmad, Rana Zeeshan Javed, Abdul Rehman Gadekallu, Thippa Reddy Chen, Chin-Ling Wu, Chih-Ming |
author_sort | Ali, Tahir Mohammad |
collection | PubMed |
description | Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the tumorous region. Therefore, reliable and automatic segmentation and prediction are necessary for the segmentation of brain tumors. This paper proposes a reliable and efficient neural network variant, i.e., an attention-based convolutional neural network for brain tumor segmentation. Specifically, an encoder part of the UNET is a pre-trained VGG19 network followed by the adjacent decoder parts with an attention gate for segmentation noise induction and a denoising mechanism for avoiding overfitting. The dataset we are using for segmentation is BRATS’20, which comprises four different MRI modalities and one target mask file. The abovementioned algorithm resulted in a dice similarity coefficient of 0.83, 0.86, and 0.90 for enhancing, core, and whole tumors, respectively. |
format | Online Article Text |
id | pubmed-9202559 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92025592022-06-17 A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor Ali, Tahir Mohammad Nawaz, Ali Ur Rehman, Attique Ahmad, Rana Zeeshan Javed, Abdul Rehman Gadekallu, Thippa Reddy Chen, Chin-Ling Wu, Chih-Ming Front Oncol Oncology Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the tumorous region. Therefore, reliable and automatic segmentation and prediction are necessary for the segmentation of brain tumors. This paper proposes a reliable and efficient neural network variant, i.e., an attention-based convolutional neural network for brain tumor segmentation. Specifically, an encoder part of the UNET is a pre-trained VGG19 network followed by the adjacent decoder parts with an attention gate for segmentation noise induction and a denoising mechanism for avoiding overfitting. The dataset we are using for segmentation is BRATS’20, which comprises four different MRI modalities and one target mask file. The abovementioned algorithm resulted in a dice similarity coefficient of 0.83, 0.86, and 0.90 for enhancing, core, and whole tumors, respectively. Frontiers Media S.A. 2022-06-01 /pmc/articles/PMC9202559/ /pubmed/35719987 http://dx.doi.org/10.3389/fonc.2022.873268 Text en Copyright © 2022 Ali, Nawaz, Ur Rehman, Ahmad, Javed, Gadekallu, Chen and Wu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Ali, Tahir Mohammad Nawaz, Ali Ur Rehman, Attique Ahmad, Rana Zeeshan Javed, Abdul Rehman Gadekallu, Thippa Reddy Chen, Chin-Ling Wu, Chih-Ming A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title | A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title_full | A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title_fullStr | A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title_full_unstemmed | A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title_short | A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor |
title_sort | sequential machine learning-cum-attention mechanism for effective segmentation of brain tumor |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202559/ https://www.ncbi.nlm.nih.gov/pubmed/35719987 http://dx.doi.org/10.3389/fonc.2022.873268 |
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