Cargando…

A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor

Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the...

Descripción completa

Detalles Bibliográficos
Autores principales: Ali, Tahir Mohammad, Nawaz, Ali, Ur Rehman, Attique, Ahmad, Rana Zeeshan, Javed, Abdul Rehman, Gadekallu, Thippa Reddy, Chen, Chin-Ling, Wu, Chih-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202559/
https://www.ncbi.nlm.nih.gov/pubmed/35719987
http://dx.doi.org/10.3389/fonc.2022.873268
_version_ 1784728555777687552
author Ali, Tahir Mohammad
Nawaz, Ali
Ur Rehman, Attique
Ahmad, Rana Zeeshan
Javed, Abdul Rehman
Gadekallu, Thippa Reddy
Chen, Chin-Ling
Wu, Chih-Ming
author_facet Ali, Tahir Mohammad
Nawaz, Ali
Ur Rehman, Attique
Ahmad, Rana Zeeshan
Javed, Abdul Rehman
Gadekallu, Thippa Reddy
Chen, Chin-Ling
Wu, Chih-Ming
author_sort Ali, Tahir Mohammad
collection PubMed
description Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the tumorous region. Therefore, reliable and automatic segmentation and prediction are necessary for the segmentation of brain tumors. This paper proposes a reliable and efficient neural network variant, i.e., an attention-based convolutional neural network for brain tumor segmentation. Specifically, an encoder part of the UNET is a pre-trained VGG19 network followed by the adjacent decoder parts with an attention gate for segmentation noise induction and a denoising mechanism for avoiding overfitting. The dataset we are using for segmentation is BRATS’20, which comprises four different MRI modalities and one target mask file. The abovementioned algorithm resulted in a dice similarity coefficient of 0.83, 0.86, and 0.90 for enhancing, core, and whole tumors, respectively.
format Online
Article
Text
id pubmed-9202559
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92025592022-06-17 A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor Ali, Tahir Mohammad Nawaz, Ali Ur Rehman, Attique Ahmad, Rana Zeeshan Javed, Abdul Rehman Gadekallu, Thippa Reddy Chen, Chin-Ling Wu, Chih-Ming Front Oncol Oncology Magnetic resonance imaging is the most generally utilized imaging methodology that permits radiologists to look inside the cerebrum using radio waves and magnets for tumor identification. However, it is tedious and complex to identify the tumorous and nontumorous regions due to the complexity in the tumorous region. Therefore, reliable and automatic segmentation and prediction are necessary for the segmentation of brain tumors. This paper proposes a reliable and efficient neural network variant, i.e., an attention-based convolutional neural network for brain tumor segmentation. Specifically, an encoder part of the UNET is a pre-trained VGG19 network followed by the adjacent decoder parts with an attention gate for segmentation noise induction and a denoising mechanism for avoiding overfitting. The dataset we are using for segmentation is BRATS’20, which comprises four different MRI modalities and one target mask file. The abovementioned algorithm resulted in a dice similarity coefficient of 0.83, 0.86, and 0.90 for enhancing, core, and whole tumors, respectively. Frontiers Media S.A. 2022-06-01 /pmc/articles/PMC9202559/ /pubmed/35719987 http://dx.doi.org/10.3389/fonc.2022.873268 Text en Copyright © 2022 Ali, Nawaz, Ur Rehman, Ahmad, Javed, Gadekallu, Chen and Wu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Ali, Tahir Mohammad
Nawaz, Ali
Ur Rehman, Attique
Ahmad, Rana Zeeshan
Javed, Abdul Rehman
Gadekallu, Thippa Reddy
Chen, Chin-Ling
Wu, Chih-Ming
A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title_full A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title_fullStr A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title_full_unstemmed A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title_short A Sequential Machine Learning-cum-Attention Mechanism for Effective Segmentation of Brain Tumor
title_sort sequential machine learning-cum-attention mechanism for effective segmentation of brain tumor
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202559/
https://www.ncbi.nlm.nih.gov/pubmed/35719987
http://dx.doi.org/10.3389/fonc.2022.873268
work_keys_str_mv AT alitahirmohammad asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT nawazali asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT urrehmanattique asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT ahmadranazeeshan asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT javedabdulrehman asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT gadekalluthippareddy asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT chenchinling asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT wuchihming asequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT alitahirmohammad sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT nawazali sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT urrehmanattique sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT ahmadranazeeshan sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT javedabdulrehman sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT gadekalluthippareddy sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT chenchinling sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor
AT wuchihming sequentialmachinelearningcumattentionmechanismforeffectivesegmentationofbraintumor