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Dynamic and widespread control of poly(A) tail length during macrophage activation

The poly(A) tail enhances translation and transcript stability, and tail length is under dynamic control during cell state transitions. Tail regulation plays essential roles in translational timing and fertilization in early development, but poly(A) tail dynamics have not been fully explored in post...

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Autores principales: Kwak, Yeonui, Daly, Ciarán W.P., Fogarty, Elizabeth A., Grimson, Andrew, Kwak, Hojoong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202586/
https://www.ncbi.nlm.nih.gov/pubmed/35512831
http://dx.doi.org/10.1261/rna.078918.121
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author Kwak, Yeonui
Daly, Ciarán W.P.
Fogarty, Elizabeth A.
Grimson, Andrew
Kwak, Hojoong
author_facet Kwak, Yeonui
Daly, Ciarán W.P.
Fogarty, Elizabeth A.
Grimson, Andrew
Kwak, Hojoong
author_sort Kwak, Yeonui
collection PubMed
description The poly(A) tail enhances translation and transcript stability, and tail length is under dynamic control during cell state transitions. Tail regulation plays essential roles in translational timing and fertilization in early development, but poly(A) tail dynamics have not been fully explored in post-embryonic systems. Here, we examined the landscape and impact of tail length control during macrophage activation. Upon activation, more than 1500 mRNAs, including proinflammatory genes, underwent distinctive changes in tail lengths. Increases in tail length correlated with mRNA levels regardless of transcriptional activity, and many mRNAs that underwent tail extension encode proteins necessary for immune function and post-transcriptional regulation. Strikingly, we found that ZFP36, whose protein product destabilizes target transcripts, undergoes tail extension. Our analyses indicate that many mRNAs undergoing tail lengthening are, in turn, degraded by elevated levels of ZFP36, constituting a post-transcriptional feedback loop that ensures transient regulation of transcripts integral to macrophage activation. Taken together, this study establishes the complexity, relevance, and widespread nature of poly(A) tail dynamics, and the resulting post-transcriptional regulation during macrophage activation.
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spelling pubmed-92025862022-07-01 Dynamic and widespread control of poly(A) tail length during macrophage activation Kwak, Yeonui Daly, Ciarán W.P. Fogarty, Elizabeth A. Grimson, Andrew Kwak, Hojoong RNA Article The poly(A) tail enhances translation and transcript stability, and tail length is under dynamic control during cell state transitions. Tail regulation plays essential roles in translational timing and fertilization in early development, but poly(A) tail dynamics have not been fully explored in post-embryonic systems. Here, we examined the landscape and impact of tail length control during macrophage activation. Upon activation, more than 1500 mRNAs, including proinflammatory genes, underwent distinctive changes in tail lengths. Increases in tail length correlated with mRNA levels regardless of transcriptional activity, and many mRNAs that underwent tail extension encode proteins necessary for immune function and post-transcriptional regulation. Strikingly, we found that ZFP36, whose protein product destabilizes target transcripts, undergoes tail extension. Our analyses indicate that many mRNAs undergoing tail lengthening are, in turn, degraded by elevated levels of ZFP36, constituting a post-transcriptional feedback loop that ensures transient regulation of transcripts integral to macrophage activation. Taken together, this study establishes the complexity, relevance, and widespread nature of poly(A) tail dynamics, and the resulting post-transcriptional regulation during macrophage activation. Cold Spring Harbor Laboratory Press 2022-07 /pmc/articles/PMC9202586/ /pubmed/35512831 http://dx.doi.org/10.1261/rna.078918.121 Text en © 2022 Kwak et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society https://creativecommons.org/licenses/by-nc/4.0/This article, published in RNA, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Article
Kwak, Yeonui
Daly, Ciarán W.P.
Fogarty, Elizabeth A.
Grimson, Andrew
Kwak, Hojoong
Dynamic and widespread control of poly(A) tail length during macrophage activation
title Dynamic and widespread control of poly(A) tail length during macrophage activation
title_full Dynamic and widespread control of poly(A) tail length during macrophage activation
title_fullStr Dynamic and widespread control of poly(A) tail length during macrophage activation
title_full_unstemmed Dynamic and widespread control of poly(A) tail length during macrophage activation
title_short Dynamic and widespread control of poly(A) tail length during macrophage activation
title_sort dynamic and widespread control of poly(a) tail length during macrophage activation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202586/
https://www.ncbi.nlm.nih.gov/pubmed/35512831
http://dx.doi.org/10.1261/rna.078918.121
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