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Diagnosis of dengue virus infection using spectroscopic images and deep learning

Dengue virus (DENV) infection is one of the major health issues and a substantial epidemic infectious human disease. More than two billion humans are living in dengue susceptible regions with annual infection mortality rate is about 5%–20%. At initial stages, it is difficult to differentiate dengue...

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Autores principales: Hassan, Mehdi, Ali, Safdar, Saleem, Muhammad, Sanaullah, Muhammad, Fahad, Labiba Gillani, Kim, Jin Young, Alquhayz, Hani, Tahir, Syed Fahad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202626/
https://www.ncbi.nlm.nih.gov/pubmed/35721412
http://dx.doi.org/10.7717/peerj-cs.985
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author Hassan, Mehdi
Ali, Safdar
Saleem, Muhammad
Sanaullah, Muhammad
Fahad, Labiba Gillani
Kim, Jin Young
Alquhayz, Hani
Tahir, Syed Fahad
author_facet Hassan, Mehdi
Ali, Safdar
Saleem, Muhammad
Sanaullah, Muhammad
Fahad, Labiba Gillani
Kim, Jin Young
Alquhayz, Hani
Tahir, Syed Fahad
author_sort Hassan, Mehdi
collection PubMed
description Dengue virus (DENV) infection is one of the major health issues and a substantial epidemic infectious human disease. More than two billion humans are living in dengue susceptible regions with annual infection mortality rate is about 5%–20%. At initial stages, it is difficult to differentiate dengue virus symptoms with other similar diseases. The main objective of this research is to diagnose dengue virus infection in human blood sera for better treatment and rehabilitation process. A novel and robust approach is proposed based on Raman spectroscopy and deep learning. In this regard, the ResNet101 deep learning model is modified by exploiting transfer learning (TL) concept on Raman spectroscopic data of human blood sera. Sample size was selected using standard statistical tests. The proposed model is evaluated on 2,000 Raman spectra images in which 1,200 are DENV-infected of human blood sera samples, and 800 are healthy ones. It offers 96.0% accuracy on testing data for DENV infection diagnosis. Moreover, the developed approach demonstrated minimum improvement of 6.0% and 7.0% in terms of AUC and Kappa index respectively over the other state-of-the-art techniques. The developed model offers superior performance to capture minute Raman spectral variations due to the better residual learning capability and generalization ability compared to others deep learning models. The developed model revealed that it might be applied for diagnosis of DENV infection to save precious human lives.
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spelling pubmed-92026262022-06-17 Diagnosis of dengue virus infection using spectroscopic images and deep learning Hassan, Mehdi Ali, Safdar Saleem, Muhammad Sanaullah, Muhammad Fahad, Labiba Gillani Kim, Jin Young Alquhayz, Hani Tahir, Syed Fahad PeerJ Comput Sci Bioinformatics Dengue virus (DENV) infection is one of the major health issues and a substantial epidemic infectious human disease. More than two billion humans are living in dengue susceptible regions with annual infection mortality rate is about 5%–20%. At initial stages, it is difficult to differentiate dengue virus symptoms with other similar diseases. The main objective of this research is to diagnose dengue virus infection in human blood sera for better treatment and rehabilitation process. A novel and robust approach is proposed based on Raman spectroscopy and deep learning. In this regard, the ResNet101 deep learning model is modified by exploiting transfer learning (TL) concept on Raman spectroscopic data of human blood sera. Sample size was selected using standard statistical tests. The proposed model is evaluated on 2,000 Raman spectra images in which 1,200 are DENV-infected of human blood sera samples, and 800 are healthy ones. It offers 96.0% accuracy on testing data for DENV infection diagnosis. Moreover, the developed approach demonstrated minimum improvement of 6.0% and 7.0% in terms of AUC and Kappa index respectively over the other state-of-the-art techniques. The developed model offers superior performance to capture minute Raman spectral variations due to the better residual learning capability and generalization ability compared to others deep learning models. The developed model revealed that it might be applied for diagnosis of DENV infection to save precious human lives. PeerJ Inc. 2022-06-01 /pmc/articles/PMC9202626/ /pubmed/35721412 http://dx.doi.org/10.7717/peerj-cs.985 Text en ©2022 Hassan et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Hassan, Mehdi
Ali, Safdar
Saleem, Muhammad
Sanaullah, Muhammad
Fahad, Labiba Gillani
Kim, Jin Young
Alquhayz, Hani
Tahir, Syed Fahad
Diagnosis of dengue virus infection using spectroscopic images and deep learning
title Diagnosis of dengue virus infection using spectroscopic images and deep learning
title_full Diagnosis of dengue virus infection using spectroscopic images and deep learning
title_fullStr Diagnosis of dengue virus infection using spectroscopic images and deep learning
title_full_unstemmed Diagnosis of dengue virus infection using spectroscopic images and deep learning
title_short Diagnosis of dengue virus infection using spectroscopic images and deep learning
title_sort diagnosis of dengue virus infection using spectroscopic images and deep learning
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9202626/
https://www.ncbi.nlm.nih.gov/pubmed/35721412
http://dx.doi.org/10.7717/peerj-cs.985
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