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A database of animal metagenomes
With the rapid development of high-throughput sequencing technology, the amount of metagenomic data (including both 16S and whole-genome sequencing data) in public repositories is increasing exponentially. However, owing to the large and decentralized nature of the data, it is still difficult for us...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9203544/ https://www.ncbi.nlm.nih.gov/pubmed/35710683 http://dx.doi.org/10.1038/s41597-022-01444-w |
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author | Hu, Ruirui Yao, Rui Li, Lei Xu, Yueren Lei, Bingbing Tang, Guohao Liang, Haowei Lei, Yunjiao Li, Cunyuan Li, Xiaoyue Liu, Kaiping Wang, Limin Zhang, Yunfeng Wang, Yue Cui, Yuying Dai, Jihong Ni, Wei Zhou, Ping Yu, Baohua Hu, Shengwei |
author_facet | Hu, Ruirui Yao, Rui Li, Lei Xu, Yueren Lei, Bingbing Tang, Guohao Liang, Haowei Lei, Yunjiao Li, Cunyuan Li, Xiaoyue Liu, Kaiping Wang, Limin Zhang, Yunfeng Wang, Yue Cui, Yuying Dai, Jihong Ni, Wei Zhou, Ping Yu, Baohua Hu, Shengwei |
author_sort | Hu, Ruirui |
collection | PubMed |
description | With the rapid development of high-throughput sequencing technology, the amount of metagenomic data (including both 16S and whole-genome sequencing data) in public repositories is increasing exponentially. However, owing to the large and decentralized nature of the data, it is still difficult for users to mine, compare, and analyze the data. The animal metagenome database (AnimalMetagenome DB) integrates metagenomic sequencing data with host information, making it easier for users to find data of interest. The AnimalMetagenome DB is designed to contain all public metagenomic data from animals, and the data are divided into domestic and wild animal categories. Users can browse, search, and download animal metagenomic data of interest based on different attributes of the metadata such as animal species, sample site, study purpose, and DNA extraction method. The AnimalMetagenome DB version 1.0 includes metadata for 82,097 metagenomes from 4 domestic animals (pigs, bovines, horses, and sheep) and 540 wild animals. These metagenomes cover 15 years of experiments, 73 countries, 1,044 studies, 63,214 amplicon sequencing data, and 10,672 whole genome sequencing data. All data in the database are hosted and available in figshare 10.6084/m9.figshare.19728619. |
format | Online Article Text |
id | pubmed-9203544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92035442022-06-18 A database of animal metagenomes Hu, Ruirui Yao, Rui Li, Lei Xu, Yueren Lei, Bingbing Tang, Guohao Liang, Haowei Lei, Yunjiao Li, Cunyuan Li, Xiaoyue Liu, Kaiping Wang, Limin Zhang, Yunfeng Wang, Yue Cui, Yuying Dai, Jihong Ni, Wei Zhou, Ping Yu, Baohua Hu, Shengwei Sci Data Data Descriptor With the rapid development of high-throughput sequencing technology, the amount of metagenomic data (including both 16S and whole-genome sequencing data) in public repositories is increasing exponentially. However, owing to the large and decentralized nature of the data, it is still difficult for users to mine, compare, and analyze the data. The animal metagenome database (AnimalMetagenome DB) integrates metagenomic sequencing data with host information, making it easier for users to find data of interest. The AnimalMetagenome DB is designed to contain all public metagenomic data from animals, and the data are divided into domestic and wild animal categories. Users can browse, search, and download animal metagenomic data of interest based on different attributes of the metadata such as animal species, sample site, study purpose, and DNA extraction method. The AnimalMetagenome DB version 1.0 includes metadata for 82,097 metagenomes from 4 domestic animals (pigs, bovines, horses, and sheep) and 540 wild animals. These metagenomes cover 15 years of experiments, 73 countries, 1,044 studies, 63,214 amplicon sequencing data, and 10,672 whole genome sequencing data. All data in the database are hosted and available in figshare 10.6084/m9.figshare.19728619. Nature Publishing Group UK 2022-06-16 /pmc/articles/PMC9203544/ /pubmed/35710683 http://dx.doi.org/10.1038/s41597-022-01444-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Hu, Ruirui Yao, Rui Li, Lei Xu, Yueren Lei, Bingbing Tang, Guohao Liang, Haowei Lei, Yunjiao Li, Cunyuan Li, Xiaoyue Liu, Kaiping Wang, Limin Zhang, Yunfeng Wang, Yue Cui, Yuying Dai, Jihong Ni, Wei Zhou, Ping Yu, Baohua Hu, Shengwei A database of animal metagenomes |
title | A database of animal metagenomes |
title_full | A database of animal metagenomes |
title_fullStr | A database of animal metagenomes |
title_full_unstemmed | A database of animal metagenomes |
title_short | A database of animal metagenomes |
title_sort | database of animal metagenomes |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9203544/ https://www.ncbi.nlm.nih.gov/pubmed/35710683 http://dx.doi.org/10.1038/s41597-022-01444-w |
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