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Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma
Increasing evidence has confirmed the close connection between inflammatory response and tumorigenesis. However, the relationship between inflammatory response genes (IRGs) and the prognosis of lung adenocarcinoma (LUAD) as well as the response to drug therapy remains poorly investigated. Here, we c...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9203558/ https://www.ncbi.nlm.nih.gov/pubmed/35710585 http://dx.doi.org/10.1038/s41598-022-14323-6 |
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author | Song, Congkuan Lu, Zilong Lai, Kai Li, Donghang Hao, Bo Xu, Chenzhen Pan, Shize Li, Ning Geng, Qing |
author_facet | Song, Congkuan Lu, Zilong Lai, Kai Li, Donghang Hao, Bo Xu, Chenzhen Pan, Shize Li, Ning Geng, Qing |
author_sort | Song, Congkuan |
collection | PubMed |
description | Increasing evidence has confirmed the close connection between inflammatory response and tumorigenesis. However, the relationship between inflammatory response genes (IRGs) and the prognosis of lung adenocarcinoma (LUAD) as well as the response to drug therapy remains poorly investigated. Here, we comprehensively analyzed IRGs RNA expression profiling and clinical features of over 2000 LUAD patients from 12 public datasets. The Cox regression method and LASSO analysis were combined to develop a novel IRG signature for risk stratification and drug efficacy prediction in LUAD patients. Enriched pathways, tumor microenvironment (TME), genomic and somatic mutation landscape in different subgroups were evaluated and compared with each other. This established IRG signature including 11 IRGs (ADM, GPC3, IL7R, NMI, NMURI, PSEN1, PTPRE, PVR, SEMA4D, SERPINE1, SPHK1), could well categorize patients into significantly different prognostic subgroups, and have better predictive in independently assessing survival as compared to a single clinical factor. High IRG scores (IRGS) patients might benefit more from immunotherapy and chemotherapy. Comprehensive analysis uncovered significant differences in enriched pathways, TME, genomic and somatic mutation landscape between the two subgroups. Additionally, integrating the IRGS and TNM stage, a reliable prognostic nomogram was developed to optimize survival prediction, and validated in an independent external dataset for clinical application. Take together, the proposed IRG signature in this study is a promising biomarker for risk stratification and drug efficacy prediction in LUAD patients. This study may be meaningful for explaining the responses of clinical therapeutic drugs and providing new strategies for administrating sufferer of LUAD. |
format | Online Article Text |
id | pubmed-9203558 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92035582022-06-18 Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma Song, Congkuan Lu, Zilong Lai, Kai Li, Donghang Hao, Bo Xu, Chenzhen Pan, Shize Li, Ning Geng, Qing Sci Rep Article Increasing evidence has confirmed the close connection between inflammatory response and tumorigenesis. However, the relationship between inflammatory response genes (IRGs) and the prognosis of lung adenocarcinoma (LUAD) as well as the response to drug therapy remains poorly investigated. Here, we comprehensively analyzed IRGs RNA expression profiling and clinical features of over 2000 LUAD patients from 12 public datasets. The Cox regression method and LASSO analysis were combined to develop a novel IRG signature for risk stratification and drug efficacy prediction in LUAD patients. Enriched pathways, tumor microenvironment (TME), genomic and somatic mutation landscape in different subgroups were evaluated and compared with each other. This established IRG signature including 11 IRGs (ADM, GPC3, IL7R, NMI, NMURI, PSEN1, PTPRE, PVR, SEMA4D, SERPINE1, SPHK1), could well categorize patients into significantly different prognostic subgroups, and have better predictive in independently assessing survival as compared to a single clinical factor. High IRG scores (IRGS) patients might benefit more from immunotherapy and chemotherapy. Comprehensive analysis uncovered significant differences in enriched pathways, TME, genomic and somatic mutation landscape between the two subgroups. Additionally, integrating the IRGS and TNM stage, a reliable prognostic nomogram was developed to optimize survival prediction, and validated in an independent external dataset for clinical application. Take together, the proposed IRG signature in this study is a promising biomarker for risk stratification and drug efficacy prediction in LUAD patients. This study may be meaningful for explaining the responses of clinical therapeutic drugs and providing new strategies for administrating sufferer of LUAD. Nature Publishing Group UK 2022-06-16 /pmc/articles/PMC9203558/ /pubmed/35710585 http://dx.doi.org/10.1038/s41598-022-14323-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Song, Congkuan Lu, Zilong Lai, Kai Li, Donghang Hao, Bo Xu, Chenzhen Pan, Shize Li, Ning Geng, Qing Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title | Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title_full | Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title_fullStr | Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title_full_unstemmed | Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title_short | Identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
title_sort | identification of an inflammatory response signature associated with prognostic stratification and drug sensitivity in lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9203558/ https://www.ncbi.nlm.nih.gov/pubmed/35710585 http://dx.doi.org/10.1038/s41598-022-14323-6 |
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