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Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study

BACKGROUND: Owing to the nature of health data, their sharing and reuse for research are limited by legal, technical, and ethical implications. In this sense, to address that challenge and facilitate and promote the discovery of scientific knowledge, the Findable, Accessible, Interoperable, and Reus...

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Autores principales: Alvarez-Romero, Celia, Martinez-Garcia, Alicia, Ternero Vega, Jara, Díaz-Jimènez, Pablo, Jimènez-Juan, Carlos, Nieto-Martín, María Dolores, Román Villarán, Esther, Kovacevic, Tomi, Bokan, Darijo, Hromis, Sanja, Djekic Malbasa, Jelena, Beslać, Suzana, Zaric, Bojan, Gencturk, Mert, Sinaci, A Anil, Ollero Baturone, Manuel, Parra Calderón, Carlos Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9204581/
https://www.ncbi.nlm.nih.gov/pubmed/35653170
http://dx.doi.org/10.2196/35307
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author Alvarez-Romero, Celia
Martinez-Garcia, Alicia
Ternero Vega, Jara
Díaz-Jimènez, Pablo
Jimènez-Juan, Carlos
Nieto-Martín, María Dolores
Román Villarán, Esther
Kovacevic, Tomi
Bokan, Darijo
Hromis, Sanja
Djekic Malbasa, Jelena
Beslać, Suzana
Zaric, Bojan
Gencturk, Mert
Sinaci, A Anil
Ollero Baturone, Manuel
Parra Calderón, Carlos Luis
author_facet Alvarez-Romero, Celia
Martinez-Garcia, Alicia
Ternero Vega, Jara
Díaz-Jimènez, Pablo
Jimènez-Juan, Carlos
Nieto-Martín, María Dolores
Román Villarán, Esther
Kovacevic, Tomi
Bokan, Darijo
Hromis, Sanja
Djekic Malbasa, Jelena
Beslać, Suzana
Zaric, Bojan
Gencturk, Mert
Sinaci, A Anil
Ollero Baturone, Manuel
Parra Calderón, Carlos Luis
author_sort Alvarez-Romero, Celia
collection PubMed
description BACKGROUND: Owing to the nature of health data, their sharing and reuse for research are limited by legal, technical, and ethical implications. In this sense, to address that challenge and facilitate and promote the discovery of scientific knowledge, the Findable, Accessible, Interoperable, and Reusable (FAIR) principles help organizations to share research data in a secure, appropriate, and useful way for other researchers. OBJECTIVE: The objective of this study was the FAIRification of existing health research data sets and applying a federated machine learning architecture on top of the FAIRified data sets of different health research performing organizations. The entire FAIR4Health solution was validated through the assessment of a federated model for real-time prediction of 30-day readmission risk in patients with chronic obstructive pulmonary disease (COPD). METHODS: The application of the FAIR principles on health research data sets in 3 different health care settings enabled a retrospective multicenter study for the development of specific federated machine learning models for the early prediction of 30-day readmission risk in patients with COPD. This predictive model was generated upon the FAIR4Health platform. Finally, an observational prospective study with 30 days follow-up was conducted in 2 health care centers from different countries. The same inclusion and exclusion criteria were used in both retrospective and prospective studies. RESULTS: Clinical validation was demonstrated through the implementation of federated machine learning models on top of the FAIRified data sets from different health research performing organizations. The federated model for predicting the 30-day hospital readmission risk was trained using retrospective data from 4.944 patients with COPD. The assessment of the predictive model was performed using the data of 100 recruited (22 from Spain and 78 from Serbia) out of 2070 observed (records viewed) patients during the observational prospective study, which was executed from April 2021 to September 2021. Significant accuracy (0.98) and precision (0.25) of the predictive model generated upon the FAIR4Health platform were observed. Therefore, the generated prediction of 30-day readmission risk was confirmed in 87% (87/100) of cases. CONCLUSIONS: Implementing a FAIR data policy in health research performing organizations to facilitate data sharing and reuse is relevant and needed, following the discovery, access, integration, and analysis of health research data. The FAIR4Health project proposes a technological solution in the health domain to facilitate alignment with the FAIR principles.
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spelling pubmed-92045812022-06-18 Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study Alvarez-Romero, Celia Martinez-Garcia, Alicia Ternero Vega, Jara Díaz-Jimènez, Pablo Jimènez-Juan, Carlos Nieto-Martín, María Dolores Román Villarán, Esther Kovacevic, Tomi Bokan, Darijo Hromis, Sanja Djekic Malbasa, Jelena Beslać, Suzana Zaric, Bojan Gencturk, Mert Sinaci, A Anil Ollero Baturone, Manuel Parra Calderón, Carlos Luis JMIR Med Inform Original Paper BACKGROUND: Owing to the nature of health data, their sharing and reuse for research are limited by legal, technical, and ethical implications. In this sense, to address that challenge and facilitate and promote the discovery of scientific knowledge, the Findable, Accessible, Interoperable, and Reusable (FAIR) principles help organizations to share research data in a secure, appropriate, and useful way for other researchers. OBJECTIVE: The objective of this study was the FAIRification of existing health research data sets and applying a federated machine learning architecture on top of the FAIRified data sets of different health research performing organizations. The entire FAIR4Health solution was validated through the assessment of a federated model for real-time prediction of 30-day readmission risk in patients with chronic obstructive pulmonary disease (COPD). METHODS: The application of the FAIR principles on health research data sets in 3 different health care settings enabled a retrospective multicenter study for the development of specific federated machine learning models for the early prediction of 30-day readmission risk in patients with COPD. This predictive model was generated upon the FAIR4Health platform. Finally, an observational prospective study with 30 days follow-up was conducted in 2 health care centers from different countries. The same inclusion and exclusion criteria were used in both retrospective and prospective studies. RESULTS: Clinical validation was demonstrated through the implementation of federated machine learning models on top of the FAIRified data sets from different health research performing organizations. The federated model for predicting the 30-day hospital readmission risk was trained using retrospective data from 4.944 patients with COPD. The assessment of the predictive model was performed using the data of 100 recruited (22 from Spain and 78 from Serbia) out of 2070 observed (records viewed) patients during the observational prospective study, which was executed from April 2021 to September 2021. Significant accuracy (0.98) and precision (0.25) of the predictive model generated upon the FAIR4Health platform were observed. Therefore, the generated prediction of 30-day readmission risk was confirmed in 87% (87/100) of cases. CONCLUSIONS: Implementing a FAIR data policy in health research performing organizations to facilitate data sharing and reuse is relevant and needed, following the discovery, access, integration, and analysis of health research data. The FAIR4Health project proposes a technological solution in the health domain to facilitate alignment with the FAIR principles. JMIR Publications 2022-06-02 /pmc/articles/PMC9204581/ /pubmed/35653170 http://dx.doi.org/10.2196/35307 Text en ©Celia Alvarez-Romero, Alicia Martinez-Garcia, Jara Ternero Vega, Pablo Díaz-Jimènez, Carlos Jimènez-Juan, María Dolores Nieto-Martín, Esther Román Villarán, Tomi Kovacevic, Darijo Bokan, Sanja Hromis, Jelena Djekic Malbasa, Suzana Beslać, Bojan Zaric, Mert Gencturk, A Anil Sinaci, Manuel Ollero Baturone, Carlos Luis Parra Calderón. Originally published in JMIR Medical Informatics (https://medinform.jmir.org), 02.06.2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Medical Informatics, is properly cited. The complete bibliographic information, a link to the original publication on https://medinform.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Alvarez-Romero, Celia
Martinez-Garcia, Alicia
Ternero Vega, Jara
Díaz-Jimènez, Pablo
Jimènez-Juan, Carlos
Nieto-Martín, María Dolores
Román Villarán, Esther
Kovacevic, Tomi
Bokan, Darijo
Hromis, Sanja
Djekic Malbasa, Jelena
Beslać, Suzana
Zaric, Bojan
Gencturk, Mert
Sinaci, A Anil
Ollero Baturone, Manuel
Parra Calderón, Carlos Luis
Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title_full Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title_fullStr Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title_full_unstemmed Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title_short Predicting 30-Day Readmission Risk for Patients With Chronic Obstructive Pulmonary Disease Through a Federated Machine Learning Architecture on Findable, Accessible, Interoperable, and Reusable (FAIR) Data: Development and Validation Study
title_sort predicting 30-day readmission risk for patients with chronic obstructive pulmonary disease through a federated machine learning architecture on findable, accessible, interoperable, and reusable (fair) data: development and validation study
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9204581/
https://www.ncbi.nlm.nih.gov/pubmed/35653170
http://dx.doi.org/10.2196/35307
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